BAC Information

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BAC

Clone NameMSMg01-491J12
Chromosome16 (Build37)
Map Location 89,887,712 - 89,888,022
singlet/doubletsinglet
Overlap geneTiam1
Upstream geneKrtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491J12.T7 (MSMg01no491_j12.b1)MSMg01-491J12.TJ (MSMg01no491_j12.g1)
ACCAG569551AG569552
length753748
length of high quality
(start - end)
561 (64 - 624)311 (316 - 626)
definitionCHROMAT_FILE: MSMg01no491_j12.b1 PHD_FILE: MSMg01no491_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:33 2005CHROMAT_FILE: MSMg01no491_j12.g1 PHD_FILE: MSMg01no491_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTCAGAGAATGGCGCGGAATCAAGGCCCA
TTTCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAA
AGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGAC
AAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTA
GCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAA
AGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAA
GTGACCCTAATAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTC
GGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCT
CTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCT
TCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACTCTAACTAAG
GAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAAT
TAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCA
GGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTC
AATGCAATCCCCATCAAAATTCCCACTCAATTCTTCAACGAATTGGAAGG
AGCAATTTGCAAATTTGTCTGGAATAACAAAAACCTAAGATAGCAAAAAG
TCG
AGGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCCGAAATTCTTCCCCACGGNCTCAGGCATTTAAATTTCTGTCCGCAGT
TAGTGTTGCTGTCTGAGGTTCAGGAGGTGTGGTCTTGGAACAAGCAAATC
TCGTCACTGTAAGATTTAAGAGTTTAAAAGACCATTTCAAGACTGTCATG
GTGGGGGACACCTTTAATCCCTATACTCAGGAGGTGGAGGTAGGCAGATC
ATTGAGTTTGAGGCTAACCTGGTCTATAGAGTGAGTTCTGTTCCAGGATA
GCCAGGGCTACTTAGAGAAACTCTGTTTCATAAAGACCAAACAAATTAAT
CACAAAAAAGGAAGGATGTTGAAAACCCCTTCCCCTCTTTCTGCCTGTTA
GCTATGTTGCCTTGGGTAAGCGATAGAGGCCATTCCAAGTTCCTTCTCTT
GGCTTCCTGCTTGTGGTTTAAGACATAAATTCTTAGCTTCTGTTTCAGCC
ACTGTGCCTGCCTCTTACTGCCCTGCTTCCTGGACTTGAGGGAATGTAAT
CTTTCTGCAACCATAAGCCCAAATAAACTCCTCCTTCTGCATCACAAAAG
TAGGAAAAAGCAGTTAATGTACAGATCCAGCCTTCTTCAGAGGGCCGAGA
CCCATGAAGTCAAATTCCAGAAGTTCACAGATTTCTTTACCTCCACGGCT
TCTGGTTATCCAAAATTGTCAGATTCCCTTACTGTCTTACGTCTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_j12.g1 MSMg01no491_j12.g1 CHROMAT_FILE:
MSMg01no491_j12.g1 PHD_FILE: MSMg01no491_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:33 2005
         (311 letters)



>mm_chr16_89887709_89888419
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaactctgtttcataaagaccaaacaaattaatcacaaaaaaggaaggatgttgaaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 314 agaaactctgtttcataaagaccaaacaaattaataacaaaaaaggaaggatgttgaaaa 255

                                                                       
Query: 61  ccccttcccctctttctgcctgttagctatgttgccttgggtaagcgatagaggccattc 120
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 254 ccccttcccctctttctgcctgttagctatgttgccttgggtaaacaatagaggccattc 195

                                                                       
Query: 121 caagttccttctcttggcttcctgcttgtggtttaagacataaattcttagcttctgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 caagttccttctcttggcttcctgcttgtggtttaagacataaattcttagcttctgttt 135

                                                                       
Query: 181 cagccactgtgcctgcctcttactgccctgcttcctggacttgagggaatgtaatctttc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 134 cagccactgtgcctgcctcttactgccctgcttcctggacttgagggaatctaatctctc 75

                                                                       
Query: 241 tgcaaccataagcccaaataaactcctccttctgcatcacaaaagtaggaaaaagcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tgcaaccataagcccaaataaactcctccttctgcatcacaaaagtaggaaaaagcagtt 15

                      
Query: 301 aatgtacagat 311
           |||||||||||
Sbjct: 14  aatgtacagat 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)