BAC Information

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BAC

Clone NameMSMg01-491K14
Chromosome16 (Build37)
Map Location 71,451,128 - 71,451,707
singlet/doubletsinglet
Overlap genenone
Upstream geneGbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K14.T7 (MSMg01no491_k14.b1)MSMg01-491K14.TJ (MSMg01no491_k14.g1)
ACCAG569603AG569604
length7371,571
length of high quality
(start - end)
585 (35 - 619)---
definitionCHROMAT_FILE: MSMg01no491_k14.b1 PHD_FILE: MSMg01no491_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:38 2005CHROMAT_FILE: MSMg01no491_k14.g1 PHD_FILE: MSMg01no491_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGCT
TTTACAGCTGAGTAGGACTCCATTGCGTAAATGTATCACATTTTCTGTAT
CCATCCCTCTGTTGAGGGACATCTGGATTCTTTCCAGCATCTGGCTATTA
TAAATAAGGCTGCAGTGTAGGGGAATAGCAAGACAGGGAAGTAGGAGCGG
GTTGGTTGGTGAACAGCGGGAGGGGGTATGGGATAGGGGGTTTTCAGAAG
GGAAACTAGAAAATGGGATAACATTTGAAATGTAAATAAAGAAAATATAT
AATAAATAAAAGAGAAATGACTTCCTGTGACATTAGGAGAAACTCTTAAT
TTTTTTTTTTAACCACTTTCCCTGAAGTAAAAGAGGAGAAATGCAGGACA
CAGAGCAGTTATTCTGCCAGCATAGCTCATGCTGTGTTAGGAATATCAGA
ACCACTGTGCTCAGCATGGAGAGCATTCCTCCAAGCACAATAGCTATGTC
AACCTCTTTCTTAAAGAAGATAGCCAGATCTCAAGAGTGAATTATTGAGG
TTCAGATAAACAGGCTGGTTGTCAGAAGTTTGTTGAGTATATTATCATAA
GTGCGAACAAGGCAGCAATCAGCCTTTCGGCCTGCTTTTTAGAATGGGAC
TCATTGTCTCTGTCTCAAGAAACACCACCTCTGTAAAGAATATATTATTG
AAATGAGAAGTTGATAAGGGACAAACCACAGGCTTCT
GATAGAAGAGATATAGAGATAGTGAGATGATAGAAAATACTACTCCTCCC
CTATACTCGCTGTGNTGTGTGGCTCNGTTGTCTAGCTGTGCTGCATCTCT
CCTCGTCTCAAGATCCCCGTCGTGGCGNTAGTGTGCTGTGGTGTGCGAGT
GAACTAAGAGTCTATAGAGAGATATACGTCAAGAGGTATCGTAGTCAGGC
ACTATGTAGATAGCTATAACATGAAATAATGCAGCATGAACAGACGCTCA
TAGTCACGNAGTAGCAGCGACATCATGTGCGAGGCGCTATGATAGATGAC
AGACGAGAGCAAGACAGAACGAGTGATGAGATGCGGAGCTAAGAAGAGAG
CGCGCAGCACGCGCGTATGCGCGCAGACGGTAGATGGNACACGACAGCGA
TCNCGTCGCGTGGTCGCGAGAGCTCCTCACTGTCTCTCTCCTATACTTCT
AGATCTCTCNCTACGACTACCTATCACTTCTCGATCTACACCCTACTACT
TATTACTATATACTATTCTAACACACNTCTGCTGTGTGATTCTGGCAACG
AAGATCGCGTCAGCGTCCGCGCACACGGCACTCAGAGAGCCGCTGTATGC
ACGCGAGGTAGTCAGTGTGATAGTGANAATCTGTCTATAGTACATATAAT
ATATATATATCGCACTGCGGCGCGACGCAGATTGCGCAGACTGATCANCA
TCACTTCGATATGATGTACGTGCATCTACTCATTGCGCTAGCACTGACTC
ACATATGCAAGTATCACNGACGCAGCACTACATCCGTCATCTATACCAAT
GCCACACGTATCAGCACGTCTATAGATCGACGACTATCCACGTACTCGCT
ATACGACGTGTCCTGCGTCATTACTATACGTAAGATTGCGACATCCGCGT
GCACGTCTCGAATACGATACGACGAACGCGTACACTCACTGCGTTCTCAA
CGGGTGGCGGTCAAGCGTAGTAACGACCAATATATACCTTACCGCTCAGT
AGACACACATAGCGGATATCGATGTAACNATAATGCGATGAAGTGGCGTC
GTNCGGACGTCTTCAGTACGGATATGCACTCGCACCGATCTGCATGCACG
NANGTGAGTCGATGTATTATGTAGAGTGAGCTGTGAGATATATTGTGCGT
GGACGGATACATGCTACGCGTCTCTCACGCTCACTCTCACATGTCGNACA
AATCGTCTATACGTTTATATCGATCACATACTCGTTGACTCACTAACATT
CACACTATCTCTCCATACACACTCGTANGACTCATACACCGCAGACAACC
GACTGACCACACTAGCTATGAGGTGATACGACNCTCTNATNATCCCATAT
TCTGTCGACCGTCTCGCGCATGTCTATGACTATATACGAGCAGACGTCAT
ACATCGAGCTATATTCTCTGTTATGCTTGATATCTACTACACATTCGACT
AATCGCGAGCGAGTCTTTACACTCNAATGACGTATGAGCCACTCTTATCA
NGACACTGTNCTACTCTCTGCTCGCGTTGACGCTCATCGGATATACACTN
TCATACTCTCATGCGATGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k14.b1 MSMg01no491_k14.b1 CHROMAT_FILE:
MSMg01no491_k14.b1 PHD_FILE: MSMg01no491_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:38 2005
         (585 letters)



>mm_chr16_71450926_71451907
          Length = 982

 Score = 1027 bits (531), Expect = 0.0
 Identities = 570/585 (97%), Gaps = 9/585 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgcttttac-agctgagtaggactccattgcgtaaatgtatcacattttctg 63
           ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcattgcttttaatagcggagtaggactccattgcgtaaatgtatcacattttctg 262

                                                                       
Query: 64  tatccatccctctgttgagggacatctggattctttccagcatctggctattataaataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatccatccctctgttgagggacatctggattctttccagcatctggctattataaataa 322

                                                                       
Query: 124 ggctgcagtgtaggggaatagcaagacagggaagtaggagcgggttggttggtgaacagc 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 ggctgcagtgtaggggaatagcaagacagggaagtagaagcgggttggttggtgaacagc 382

                                                                       
Query: 184 gggagggggtatgggatagggggttttcagaagggaaactagaaaatgggataacatttg 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 383 gggagggggtatgggatagggggttt-cagaagggaaactagaaaatgggataacatttg 441

                                                                       
Query: 244 aaatgtaaataaagaaaata--ta-taataaataaaagagaaatgacttcctgtgacatt 300
           ||||||||||||||||||||  || ||| ||| |||||||||||||||||||||||||||
Sbjct: 442 aaatgtaaataaagaaaatacctaataaaaaa-aaaagagaaatgacttcctgtgacatt 500

                                                                       
Query: 301 aggagaaactcttaatttttttttttaaccactttccctgaagtaaaagaggagaaatgc 360
           |||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |
Sbjct: 501 aggagaaactcttaatttttttt---aaccactttccctgaagtaaaagaggagaaatac 557

                                                                       
Query: 361 aggacacagagcagttattctgccagcatagctcatgctgtgttaggaatatcagaacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggacacagagcagttattctgccagcatagctcatgctgtgttaggaatatcagaacca 617

                                                                       
Query: 421 ctgtgctcagcatggagagcattcctccaagcacaatagctatgtcaacctctttcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgtgctcagcatggagagcattcctccaagcacaatagctatgtcaacctctttcttaa 677

                                                                       
Query: 481 agaagatagccagatctcaagagtgaattattgaggttcagataaacaggctggttgtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaagatagccagatctcaagagtgaattattgaggttcagataaacaggctggttgtca 737

                                                        
Query: 541 gaagtttgttgagtatattatcataagtgcgaacaaggcagcaat 585
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 738 gaagtttgttgcgtatattatcataagtgcgaacaaggcagcaat 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 982
Length adjustment: 10
Effective length of query: 575
Effective length of database: 972
Effective search space:   558900
Effective search space used:   558900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)