XXXXXXXXXXXXXXXXXXXXXXTTCGTAAATAGCGCGGAATCAGGTGGTG
GTTCTTAAAAGAAGCTAGNTTTCAGCCATTGTTCCTTAAATAGATAAGTA
TCAATGGAAGAGCTTTTATTATAGATTGACCTAAGTCCAATCAAAATTCA
TTCCTGTGTTTCCTTTTTGTCTACGCTATGTAATTACCAGAACAGAACAT
TATTACAAAAGTCAGACCATAATTTTCAAAGTATACCAGTTTTTTTTAAA
TTTCTTACATCAATCATCTCAAAGGATATCTGCTAATATCATTACAGGGA
AACACAACATGTTCTCNGCTCTGTGGTTAGGTTGCTATTATTTTATGTAG
AAGAAATATGGAATGAGAATTTAGAGAAAAGAGCTAGGTAGGATGGAGAA
AGAAAACATCAAAATATGGAAAGCTAGTAAAAACAACCAGATCCAAACGT
TCCATAACATGTCTGACAAAGTTTTCTTGAGCATAGAACAGAGAATTAAA
TAATTGCATTCCTATATTTAAGACCTTGAATATAAGTTGAATAGCCAGCC
ATGTTTCTGGAGTAACTTCACTACATTTCCTCTATAATGTCAGAGATTCT
TACTATTTAAAAAGTTATCCATACCATTTGTTTGGTTTCCCAAACTTAAG
TTATAAATAGTACTTTCCAGCTTTATTAAAACAAAAAGTAGGCAGGCAGA
TCTCTGAATTCAAGAACAGCCTGGTCTACATAGGAAATTCAAGGACACCN

GGTCTGGCGGCGCCTGGCTTTTCAAACAGGTGAACTATAGAAGGATTTGC
GAAATACTAGCCATACATTTCAGCCTGAGCAGCAGGTATCAGCCACAGAG
AAAGGGCCCCCGTCCTCACAGTGTTGTGCTGGGTGCTGTGATTATGATTT
TGCTGGAGGTGATCCTTGCTTTGCATCCATCATTGCAGTGACGAGGAAAT
TGACTCTAGGTTAAGCTTTGAAAGATAAGGATTTTGGGAGTTTGGGGAGA
TCAAGACATCTGAGGATGGAACAAACATATGAATAAAATTTATCCAAGCA
TCACAATTTGTAATCTACGACACAGTAACGATAAATGACTCTGTGTTTTT
CTTTGACATGGAACAGTTAAGAACATTCAAGAGGGATAAATAAACTTTAC
TGAGAATTGGATAATAAAGTCTGGAATGCTTTTGAAAGAAACAGATGTGA
TGATTAATGGTGGTAAGATGGAGTGATGAACTGCTCAAACCAGACACCAG
CCAAACAACACCTAACGAATTGTTTTGGACATAGATGAATACAGTAAAGG
CAATATGATGTTTTCTTGGATTGATAAGAATTTCTACAAAGTTTGTGTGT
TGGTTCTGTAATGTAAACAACGATACTCTCTGCCAAGTTCTATGCCCTTT
AACTTTAGAACTTGTTCAGTATAGGCAGTTGGGACATATGTTTATTTCTG
AAACTCATAGCACTTATCTTTTGACTAATAGAGTTTTGATTTCAAAN

Query= MSMg01no491_m13.b1 MSMg01no491_m13.b1 CHROMAT_FILE:
MSMg01no491_m13.b1 PHD_FILE: MSMg01no491_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:47 2005
         (663 letters)



>mm_chr16_87163389_87164451
          Length = 1063

 Score = 1168 bits (604), Expect = 0.0
 Identities = 648/663 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagccattgttccttaaatagataagtatcaatggaagagcttttattatagattgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagccattgttccttaaatagataagtatcaatggaagagcttttattatagattgacc 260

                                                                       
Query: 61  taagtccaatcaaaattcattcctgtgtttcctttttgtctacgctatgtaattaccaga 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 taagtccaatcaaaattcattcctgtgtttcctttttgtctacactatgtaattaccaga 320

                                                                       
Query: 121 acagaacattattacaaaagtcagaccataattttcaaagtataccagttttttttaaat 180
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 321 acagaacattattacaaaagtcagaccatgattttcaaagtataccagtttttttttaat 380

                                                                       
Query: 181 ttcttacatcaatcatctcaaaggatatctgctaatatcattacagggaaacacaacatg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttacatcaatcatctcaaaggatatctgctaatatcattacagggaaacacaacatg 440

                                                                       
Query: 241 ttctcngctctgtggttaggttgctattattttatgtagaagaaatatggaatgagaatt 300
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctctgctctgtggttaggttgctattattttatgtagaagaaatatggaatgagaatt 500

                                                                       
Query: 301 tagagaaaagagctaggtaggatggagaaagaaaacatcaaaatatggaaagctagtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagaaaagagctaggtaggatggagaaagaaaacatcaaaatatggaaagctagtaaa 560

                                                                       
Query: 361 aacaaccagatccaaacgttccataacatgtctgacaaagttttcttgagcatagaacag 420
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaatcagatccaaacattccataacatgtctgacaaagttttcttgagcatagaacag 620

                                                                       
Query: 421 agaattaaataattgcattcctatatttaagaccttgaatataagttgaatagccagcca 480
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 621 agaattaaataattgcattcccatatttgagaccttgaatataagttgaatagccagcca 680

                                                                       
Query: 481 tgtttctggagtaacttcactacatttcctctataatgtcagagattcttactatttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttctggagtaacttcactacatttcctctataatgtcagagattcttactatttaaa 740

                                                                       
Query: 541 aagttatccataccatttgtttggtttcccaaacttaagttataaatagtactttccagc 600
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 741 aagttatccataccatttgtttggtttcccaaacttaaggtataaataatactttccagc 800

                                                                       
Query: 601 tttattaaaacaaaaagtaggcaggcagatctctgaattcaagaacagcctggtctacat 660
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 801 tttattaaaacaaaaagtaggcaggtagatttctgaattcaagaacagcctggtctacat 860

              
Query: 661 agg 663
           |||
Sbjct: 861 agg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_m13.g1 MSMg01no491_m13.g1 CHROMAT_FILE:
MSMg01no491_m13.g1 PHD_FILE: MSMg01no491_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:48 2005
         (344 letters)



>mm_chr16_87268482_87269225
          Length = 744

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgacacagtaacgataaatgactctgtgtttttctttgacatggaacagttaagaacatt 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cgacacagtaacgataaatcactctgtgtttttctttgacatggaacagttaagaacatt 485

                                                                       
Query: 61  caagagggataaataaactttactgagaattggataataaagtctggaatgcttttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caagagggataaataaactttactgagaattggataataaagtctggaatgcttttgaaa 425

                                                                       
Query: 121 gaaacagatgtgatgattaatggtggtaagatggagtgatgaactgctcaaaccagacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaaacagatgtgatgattaatggtggtaagatggagtgatgaactgctcaaaccagacac 365

                                                                       
Query: 181 cagccaaacaacacctaacgaattgttttggacatagatgaatacagtaaaggcaatatg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 364 cagccaaacaacacctaacgaattgctttggacatagatgaatacagtaaaggcaatatg 305

                                                                       
Query: 241 atgttttcttggattgataagaatttctacaaagtttgtgtgttggttctgtaatgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atgttttcttggattgataagaatttctacaaagtttgtgtgttggttctgtaatgtaaa 245

                                                       
Query: 301 caacgatactctctgccaagttctatgccctttaactttagaac 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caacgatactctctgccaagttctatgccctttaactttagaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)