Query= MSMg01no492_f07.b1 MSMg01no492_f07.b1 CHROMAT_FILE:
MSMg01no492_f07.b1 PHD_FILE: MSMg01no492_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:32 2005
(660 letters)
>mm_chr16_31245293_31246352
Length = 1060
Score = 1187 bits (614), Expect = 0.0
Identities = 644/654 (98%)
Strand = Plus / Plus
Query: 7 gaattcccatattttctgtacccaccctccaaaaatataacaactacctctgcccctacc 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcccatattctctgtacccaccctccaaaaatataacaactacctctgcccctacc 266
Query: 67 aacatcgtacagcaaagactatagtttatattcaggctcactcgtgctgttcagacacaa 126
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aacattgtacaccaaagactatagtttatattcaggctcactcgtgctgttcagacacaa 326
Query: 127 accaacatggatctgcccctgtggaatcgcacagcagggtcccaaggtccttgaaatcct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 accaacatggatctgcccctgtggaatcgcacagcagggtcccaaggtccttgaaatcct 386
Query: 187 gagcatcactaactcatcctccctgagcctctgtgaccgttcaccttcacctgcttgcac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gagcatcactaactcatcctccctgagcctctgtgaccgttcaccttcacctgcttgcac 446
Query: 247 agttttgcttttcctagaatgccctatttgggaccatatagtatttaggattttccttga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 agttttgcttttcctagaatgccctatttgggaccatatagtatttaggattttcctcga 506
Query: 307 gtacccaggtaaaagctgggcagctatcattccagtactgtggggtggggagacaagtgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtacccaggtaaaagctgggcagctatcattccagtactgtggggtggggagacaagtgg 566
Query: 367 gaccctggagctcactggccagccagtggagctaaataaataaggctcggtgagaaaccc 426
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 567 aaccctggagcgcactggccagccagtggagctaaataaataagactcggtgagaaaccc 626
Query: 427 ggtctcaaaatataaaacagaacaaaacgacaacaacaacaaacacaaaaaatgagagca 486
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttctcaaaatataaaacagaacaaaacgacaacaacaacaaacacaaaaaatgagagca 686
Query: 487 actgagacatctgacacacatttctggtctccacatgtatgtgtatatgtgttcaggtgc 546
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 attgagacatctgacacacatttctggtctccacatgtatgtgtatatgtgttcaggtgc 746
Query: 547 agctacaaacatgtgtgacacacacaaagtcatacatataacacacatacacacaatttt 606
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 agctacaaacacgtgtgacacacacaaagtcatacatataacacacatacacacaatttt 806
Query: 607 aaaatgttaaatgctaaaggccttcaaacgacaggcagattgaataaaatccac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaaatgttaaatgctaaaggccttcaaacgacaggcagattgaataaaatccac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_f07.g1 MSMg01no492_f07.g1 CHROMAT_FILE:
MSMg01no492_f07.g1 PHD_FILE: MSMg01no492_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:32 2005
(597 letters)
>mm_chr16_31295963_31296957
Length = 995
Score = 855 bits (442), Expect = 0.0
Identities = 507/542 (93%), Gaps = 23/542 (4%)
Strand = Plus / Minus
Query: 76 ccgaagcatgagcatcctgaaaatatctgggaaaagcagacagcctgtgaggaaaagaca 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 ccgaagcatgagcatcctgaaaatatctgggaaaagcagacagcctgtgaggaaaagaca 936
Query: 136 aaggttgtttgtttggttggtttggtttgttttttcgacatagggtttctctgtatagcc 195
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 935 aaggttgtttgtttggttggtttgttttgttttttcgacatagggtttctctgtatagcc 876
Query: 196 ctggctgtcaggggactcactttgtagaccaggctggcctcgaactcagaaacccgcctg 255
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 875 ctggctgtcaggggactcactttgtagaccatgctggcctcgaactcagaaacccgtctg 816
Query: 256 cctctgcctcccgagtgctgggattaaaggcgtgtgccaccatgcccggcttcaacgg-- 313
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 815 cctctgcctcccgagtgctgggattaaaggcgtgcgccaccatgcctggcttcaacggtg 756
Query: 314 ------tgtttgtttgtttgtttgtttaatgatgcaaaatttctctttcactcagaattt 367
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 755 tttgtttgtttgtttgtttgtttgtttaatgatgcaaattttctctttcactcagaattt 696
Query: 368 actgaggtccaattgcattccagtcagtgaaaaaaaaaaaatctagaatccctgaccacc 427
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 695 actgaggtccaattgcattccagtcagtg--aaaaaaaaaatttagaatccctgaccacc 638
Query: 428 gccctccttgcccccaagcgtcaactcagtccagtgatggaaataagacagagcaacata 487
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 637 gctctccttgcccccaagcgtcaactcagtccagtgatagaaataagacagagcaacata 578
Query: 488 gagggcatcacgggaaatcagagaccatcccaccctct-------------tcaagttat 534
|||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 577 gagggcatcacgggaaatcagagaacatcccaccctcttcaagacacaggctcaagttat 518
Query: 535 acagtatacagtctgtcttcaagccttggcactcccatgcctctgctccagtagcaagcc 594
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccagtatccagtctgtcttcaagccttggcactcccatgcctctgctccagtagcaagcc 458
Query: 595 ag 596
||
Sbjct: 457 ag 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space: 578195
Effective search space used: 578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
