XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTGTTTTTTACTCAATTATACACAGTCGTGCTTTATAAATGGTAGCAGT
GGCATGTGACATTCAATTTTAAGTTCATAAAAATTAACCAAATGAACTCA
GGGTCTCAGTCTGCACTGTCCACCTGTCATGTGCTACATGGCTGGTGTAT
TAGCTCAATACACTTCTTATCACCAAAGGGTGTTCCATGGGTCCCCGCTG
AAAGGCCAACCCTTGGTTGAATTGGTGGCTATTTCTGAACTGTCAGGCTG
CCGGCAGTGTGTTTTTAATGACTGACAACCATGTGTCTTTAGTATAATAA
TATATATATATATACACACACACACATACACACATACACACACACATACA
TACATACATACATACATACATACATACATGGCATGGTGTATGGGGTGGGA
AACTCAACCCTACAGCATGGAGCTTTGGATGGCTCACATGGGTTTGTTCT
TTTTGCAGTGAACTGAACGCCAAATCCAAGGAGCTGGTCCTGCAGATCTC
ACAGGATGGGTGCTCCTCAGAAGGTGGGTGGTGAATATGTAGAGAAGTGT
TCCAGATGAGCACTCTGGTCTAGGCTCTGGAATGGGGAGGGGAGAAACCC
TGAGAAGGAGGTGGCCTCCTCCTCTGAACCAGAGGTCTCCCAACTAAATG
TTTGGTACAAAGTTAAGAATCAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGAGGACTAATAATAAAGGTGTTTCATG
GCTTTAAAAGACTCTTACCNTGGACATGGTAGTGTATGCCTTTAATTCTA
GTATTTGGGATGTGCAAACAGGGGTGGGGCAGGGGGAGTAACAGGATAAC
TAGAATTTCAGAGTCTAAAGCTCACCTTGACTATATGAGACCCTGTCTCG
AAACAAACACAAAACCCATAGAGACAAACCCACCACTTAATTTGATCAAT
ATCAGAAAGGGACATTTTGAGCTCATAGGCCCACAGAAAAGCATTGCCAA
GGACTACTTAGTGGGCACTGTCTGACCTCAACTTTACTAAGAAGGCCCAC
TTTGGTACTTCTTGGGGGGAAGTTTCCCGAAATTTCAGGGATTCCCCGGG
GAATTTTTAAAAAGGTTCCAAAAATTACTAATTTCTAGGAATTGGCGGGG
GAAAAAGAAAAAGTTTTTCCCTTGGTAAAGGGGGGCCCCAAAACCCCTTC
TTCCAAAAAATAATCCACGGTGAAAAATTTTTTTTTTTGGGGGCGGAGAA
AAAAAAAAGAGGCTCCCTCTTTTTTAAAAAAACAAGGGTGCCCTACCCCC
TTTTTTTTTTTTTTTTCCCCCCAAAAACAAAAATGGGTGGTTAGGTGGAA
AAAACCCCCCCCCAAAA

Query= MSMg01no492_l17.b1 MSMg01no492_l17.b1 CHROMAT_FILE:
MSMg01no492_l17.b1 PHD_FILE: MSMg01no492_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:02 2005
         (604 letters)



>mm_chr16_98101192_98102195
          Length = 1004

 Score =  857 bits (443), Expect = 0.0
 Identities = 506/555 (91%), Gaps = 44/555 (7%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgttttttactcaattatacacagtcgtgctttataaatggtagcagtggc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggaattctgtgttttatactcaattatacacagtcgtgctttataaatggtagcagtggc 452

                                                                       
Query: 64  atgtgacattcaattttaagttcataaaaattaaccaaatgaactcagggtctcagtctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atgtgacattcaattttaagttcataaaaattaaccaaatgaactcagggtctcagtctg 392

                                                                       
Query: 124 cactgtccacctgtcatgtgctacatggctggtgtattagctcaatacacttcttatcac 183
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 cactgcccacctgtcatgtgctacatggctggtatattagctcaatacacttcttatcac 332

                                                                       
Query: 184 caaagggtgttccatgggtccccgctgaaaggccaacccttggttgaattggtggctatt 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaagggtgttccatgggtccccactgaaaggccaacccttggttgaattggtggctatt 272

                                                                       
Query: 244 tctgaactgtcaggctgccggcagtgtgtttttaatgactgacaaccatgtgtctttagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctgaactgtcaggctgccggcagtgtgtttttaatgactgacaaccatgtgtctttagt 212

                                                                       
Query: 304 ataataatatatatatatatacacacacacacatacacacatacacacacacatacatac 363
           |||||||||||||||||||                            |||||||||||||
Sbjct: 211 ataataatatatatatata----------------------------cacacatacatac 180

                                                                       
Query: 364 atacatacatacatacatacatacatggcatggtgtatggggtgggaaactcaaccctac 423
           ||||||||||                |||||||||| |||||||||||||||||||||||
Sbjct: 179 atacatacat----------------ggcatggtgtgtggggtgggaaactcaaccctac 136

                                                                       
Query: 424 agcatggagctttggatggctcacatgggtttgttctttttgcagtgaactgaacgccaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agcatggagctttggatggctcacatgggtttgttctttttgcagtgaactgaacgccaa 76

                                                                       
Query: 484 atccaaggagctggtcctgcagatctcacaggatgggtgctcctcagaaggtgggtggtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  atccaaggagctggtcctgcagatctcacaggatgggtgctcctcagaaggtgggtggtg 16

                          
Query: 544 aatatgtagagaagt 558
           |||||||||||||||
Sbjct: 15  aatatgtagagaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)