Query= MSMg01no493_k09.b1 MSMg01no493_k09.b1 CHROMAT_FILE:
MSMg01no493_k09.b1 PHD_FILE: MSMg01no493_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:16 2005
(486 letters)
>mm_chr16_44227399_44228283
Length = 885
Score = 909 bits (470), Expect = 0.0
Identities = 482/486 (99%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 1 ttctcttcaagtctgcttgttttgcatctgaagtagtatattgccatagtttcacctatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcttcaagtctgcttgttttgcatctgaagtagtatattgccatagtttcacctatc 260
Query: 61 tgaaaaaaaatcccatgacactttgccattggacttgtgttcctaagtgttattccttaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaaaaa-tcccatgacactttgccattggacttgtgttcctaagtgttattccttaa 319
Query: 121 gtaaatcagttatgatggagagtaaactgttcaaagaggctgcacatctgtatattcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaaatcagttatgatggagagtaaactgttcaaagaggctgcacatctgtatattcctt 379
Query: 181 acaagaagtaaacttaaaatttcacacatagaagggtagtcaatgaggattcagtctgtg 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acaagaagtaaacttagaatttcacacatagaagggtagtcaatgaggattcagtctgtg 439
Query: 241 tcctcaactgtgttcacagtggaaaaggagacgaacgtttaggtatgtgagataagggtt 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 tcctcaactgtgttcacagtggaaaaggaggcgaacgtttaggtatgtgagataagggtt 499
Query: 301 ggtatggggctggaatgatgcctttagctgatgagagcagagaaccccatggcaagtggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtatggggctggaatgatgcctttagctgatgagagcagagaaccccatggcaagtggc 559
Query: 361 tcacaccatttgtgactcagcttcagggaaaagatcttacagtctcttctggcctcttca 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcacaccgtttgtgactcagcttcagggaaaagatcttacagtctcttctggcctcttca 619
Query: 421 ggcagatgcacccatatccccagcatatacacatgtaattaaaagttaaatcttttaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggcagatgcacccatatccccagcatatacacatgtaattaaaagttaaatcttttaaag 679
Query: 481 aaagtt 486
||||||
Sbjct: 680 aaagtt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_k09.g1 MSMg01no493_k09.g1 CHROMAT_FILE:
MSMg01no493_k09.g1 PHD_FILE: MSMg01no493_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:16 2005
(522 letters)
>mm_chr16_44391334_44392255
Length = 922
Score = 928 bits (480), Expect = 0.0
Identities = 515/542 (95%), Gaps = 26/542 (4%)
Strand = Plus / Minus
Query: 1 ttttttgtgatttaacttgttaaatcagtctctcctccattc--------------gtgt 46
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 537 ttttttgtgatttaacttgttaaatcagtctctcctccattcgtgtgtgtgtgtgtgtgt 478
Query: 47 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagaacattcagaacatgcacacccgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagaacattcagaacatgcacacccgt 418
Query: 107 gcatgcaacaacagcattaagagggaaaaaataaaatattcagattgaaaataatgactt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcatgcaacaacagcattaagagggaaaaaataaaatattcagattgaaaataatgactt 358
Query: 167 tcaagacctaataggtatatgttggaggacggggccaaaattaaagattaggaaaacata 226
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaagacctaaaaggtatatgttggaggacggggccaaaattaaagattaggaaaacata 298
Query: 227 aaaacatgtgcttaagttttttt------ttcaagtttctttggaaagtcggttatgtca 280
|||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 297 aaaacatgtgcttaag------tggaaacttcaagtttctttggaaagtcggttatgtca 244
Query: 281 agtgatgttttgttggggcacacaggtgaaaggatgtcttgctaaagcagacacatgaaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgatgttttgttggggcacacaggtgaaaggatgtcttgctaaagcagacacatgaaa 184
Query: 341 gcacatgtgacgctttagaaggaatatatacataaatacatacacacacacacatatatc 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcacatgtgacgctttagaaggaatatatacataaatacatacacacacacacatatatc 124
Query: 401 cccatggacagtaggagcttgagcactgatttgcatcggccccgctagtcttcgctgagg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cccatggacagtaggagcttgagcactgatttgcatcggccccgctagtcttcgctgagg 64
Query: 461 acatgcatgcattggttcgtcttacactgcatcgctgagcttcacctgtggtgacttcat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 acatgcatgcattggttcgtcttacactgcatcgctgagcttcacctgtggtgacttcat 4
Query: 521 ag 522
||
Sbjct: 3 ag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
