TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCATTATGGACTACAGTAAAAGCATTCTTCATTAGGGATTATAGTAAA
AGCATTCTTCATTAGGGACTACAGTAATACAAACAGCAGCTCACACAGTT
GGGTGAATGGAATGATGGCTCAGAGGTTTTACTGAACAGTGTTGTTCAAA
ATCAATCCCTGTTTTCCTCTGTCTTCCTCTCCAATGGAGTGCTAACTGAT
CGTGGTAGTACTGCAACACGTACACAGGCTGCCACAAGTGTGCCATGCAT
TCATTTCTTGGAACTGTTATAACAAAGAGCAACCACCTGGATGGCTCATG
CAAGAGAACTTGTTTCTCTCCCAGTTCTGGAGGTTGAAATTGAAAGCAAA
ACATCATGCCAGGTCTTGCTCTGGGTACCTCTCCAGGAGGGCATGCTGCC
ATGTCTCTTGCAGATTATGTTAGGTTTGGTCTTCCTTGGCATGTGGAAGC
AGAACTTCAGAATGAGTCTACACCAACACATGATGTCTCCTCCTGCTGCC
CCCCACCCCCCACTATCCCTTACCTTATTCTTCCTCTGTCCAACCAAACC
TTTTTCTCGGGTTGTCAGTCATTTGCTGTTTGAAATGGGTCTTACTGACC
CATCCTAAGTTGGCTACTTCTGCAGAGACACTATTTCCAAGCAAAGTCAG
GGTCACCAGTAAGGGTGAGCCTAGAATTTCATTTATCTCTTTAGAAGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTGTCCCAGCCTCTTCACAATCCCGCG
GACCCCGGAGCAAGCTCCAGCTGTCCTGTGCCCCAGACTGCTCTTTCCCA
CCCAGAGCGGTGTCCTGGGGACCAACTCCGGCCCAGTGGGATAAACAGTC
AAACTGCCCTCATCAGCCTTGGCAAGTGGTGGAGCCCTAGGCCGACGTGG
GCGTGGGACCCACAACCCTACAAGCAGTTGTTGCTATTATTATTATTATC
ATTATTATTATTATTATTACTACTACTACTATTATTATTGCAATTGTTTG
CTATTCCACAGCTTTTGCAGGGCATCCAACATGTAGTATAAATGTGTCAA
CACAGAAATGACTTCCCTTCTAATCAGCCCTGCACCAGCTTTTCTCATGT
CAAACTATAAAATTCAGCCCAGAGCTATATAGATTCAGCTCATATGTCTC
CCTGTTGTCTCTGTGGTCTCTGTAAACTTGCAGGTAGATTTTGACGCTTG
AATGGATTTGGATGTGATTACTCAGACACATGCGAATTATGCCATTGAGG
CAGTTGTACATATACTGCTTTTGTGCCCTATCANGAGGCTTGCAATGTCT
GATTGTCTTGCTTGTGTAGATATTGCTTTNCAGGTGCTGGCAAATTTATC
CTTCCATTAAGATGTTTCCCACCAGTGTTTTTGCTGTTAGCTTCGTGACT
AA

Query= MSMg01no493_m04.b1 MSMg01no493_m04.b1 CHROMAT_FILE:
MSMg01no493_m04.b1 PHD_FILE: MSMg01no493_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
         (662 letters)



>mm_chr16_52055009_52056070
          Length = 1062

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcattatggactacagtaaaagcattcttcattagggattatagtaaaagcat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcattagggactacagtaaaagcattcttcattagggattatagtaaaagcat 264

                                                                       
Query: 65  tcttcattagggactacagtaatacaaacagcagctcacacagttgggtgaatggaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttcattagggactacagtaatacaaacagcagctcacacagttgggtgaatggaatga 324

                                                                       
Query: 125 tggctcagaggttttactgaacagtgttgttcaaaatcaatccctgttttcctctgtctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggctcagaggttttactgaacagtgttgttcaaaatcaatccctgttttcctctgtctt 384

                                                                       
Query: 185 cctctccaatggagtgctaactgatcgtggtagtactgcaacacgtacacaggctgccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctctccaatggagtgctaactgatcgtggtagtactgcaacacgtacacaggctgccac 444

                                                                       
Query: 245 aagtgtgccatgcattcatttcttggaactgttataacaaagagcaaccacctggatggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtgtgccatgcattcatttcttggaactgttataacaaagagcaaccacctggatggc 504

                                                                       
Query: 305 tcatgcaagagaacttgtttctctcccagttctggaggttgaaattgaaagcaaaacatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatgcaagagaacttgtttctctcccagttctggaggttgaaattgaaagcaaaacatc 564

                                                                       
Query: 365 atgccaggtcttgctctgggtacctctccaggagggcatgctgccatgtctcttgcagat 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 atgccaggtcttgctctgggtacctctccaggagggcgtgctgccatgtctcttgcagat 624

                                                                       
Query: 425 tatgttaggtttggtcttccttggcatgtggaagcagaacttcagaatgagtctacacca 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 tatgttaggtttggtcttccttggcatgtggaggcagaacttcagaatgagtctacacca 684

                                                                       
Query: 485 acacatgatgtctcctcctgctgccccccaccccccactatcccttaccttattcttcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacatgatgtctcctcctgctgccccccaccccccactatcccttaccttattcttcct 744

                                                                       
Query: 545 ctgtccaaccaaacctttttctcgggttgtcagtcatttgctgtttgaaatgggtcttac 604
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 ctgtccaaccaaacctttttctcgggtcgtcagtcatttgctgtttgaaatgggtcttac 804

                                                                     
Query: 605 tgacccatcctaagttggctacttctgcagagacactatttccaagcaaagtcagggt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgacccatcctaagttggctacttctgcagagacactatttccaagcaaagtcagggt 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_m04.g1 MSMg01no493_m04.g1 CHROMAT_FILE:
MSMg01no493_m04.g1 PHD_FILE: MSMg01no493_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:25 2005
         (345 letters)



>mm_chr16_52234683_52235427
          Length = 745

 Score =  513 bits (265), Expect = e-150
 Identities = 295/305 (96%)
 Strand = Plus / Minus

                                                                       
Query: 19  tattattattattattactactactactattattattgcaattgtttgctattccacagc 78
           |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 562 tattattattattattactattactattattattattggaattgtttgctattccacagc 503

                                                                       
Query: 79  ttttgcagggcatccaacatgtagtataaatgtgtcaacacagaaatgacttcccttcta 138
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 502 ttttgcagggcatccaacatgtagtatagatgtgtcaacacagaaatgacttcccttcta 443

                                                                       
Query: 139 atcagccctgcaccagcttttctcatgtcaaactataaaattcagcccagagctatatag 198
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 442 atcagccctgcaccagcttttctcatgtcaaactataaagttcagcccagagctatatag 383

                                                                       
Query: 199 attcagctcatatgtctccctgttgtctctgtggtctctgtaaacttgcaggtagatttt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attcagctcatatgtctccctgttgtctctgtggtctctgtaaacttgcaggtagatttt 323

                                                                       
Query: 259 gacgcttgaatggatttggatgtgattactcagacacatgcgaattatgccattgaggca 318
           ||| ||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||
Sbjct: 322 gacccttgaatggatttgggtgtgatgactcagacacatgtgcattatgccattgaggca 263

                
Query: 319 gttgt 323
           |||||
Sbjct: 262 gttgt 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)