BAC Information

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BAC

Clone NameMSMg01-494I15
Chromosome16 (Build37)
Map Location 92,204,106 - 92,204,665
singlet/doubletsinglet
Overlap genenone
Upstream geneOlig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494I15.T7 (MSMg01no494_i15.b1)MSMg01-494I15.TJ (MSMg01no494_i15.g1)
ACCAG571795AG571796
length716730
length of high quality
(start - end)
177 (124 - 300)560 (65 - 624)
definitionCHROMAT_FILE: MSMg01no494_i15.b1 PHD_FILE: MSMg01no494_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:24 2005CHROMAT_FILE: MSMg01no494_i15.g1 PHD_FILE: MSMg01no494_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCTGCAAACGACTCACTTTTCGGAGAGGATCCGCGGAATTCTTTG
TCTCCATTTGTTTGACTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTGCTTGGGACACTAAGGCCAAGGGGATACTTTTCTAGGGGTGTCTTA
ATCAGGGTTTCTATTCCTGCACAAACATCATGACCAAAAAGCAAGTTGGG
GAGGAAAGGGTTTATTCAGCTTACACTTCCATATTGCTGTTCATCACCAA
AGGAAGTCAGGACTGCAACTCAAGCAGGTCAAAAAGCAGGAGCGGATGCA
AAAGCCTTGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCA
GCTTACTCTCTTATAGAACTCAAGACTACCAGCACAGAAATGGTCCCACC
CACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGC
TGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAA
CTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAGAGGGATATAC
CTATAACTAAAACACTTTGCTTTTATTATATTAAAAGCTATGGTGGGACA
TACCTTTAATCCCAGTACTTGGGAGAACAAAGTATGCAGCTGGCTGTGAA
TTTGTTGACCCCCTTGTGTTAAAAAGGGACTTCCAGGGGAGTCACGGGTA
TGTAAAGAGACCCCGN
GGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAGGATTTTATTCCAGCCCCTTGACATCTCTGAAA
GGTCTTCAAGGTAAACAGTTGAAACGATTCAATTCCAATGCTTTGAACTC
GAGCAAAGATAAACAGAGCTGAAGAATGCACATCAAATTCTAGGCAGACA
TAGAATCGTTCCTAAATGGAATTGTCAGATTATAAATATCACACATTTGG
ATTTCAGTTAGCACCGAGAGGCACACCCTCAATGAAGACAGATGAGAGAG
TGAACTGGGGAGTTATGGGGTAGGAGCCAGGATCCCTGGGAAACACGCTT
CATATCCTTTCCCTCTTGCTTTCTCCCCAGGAGCAGATTAACACACAGGG
AGAAGTTGAGTATCTGTCTGGCACAGTACAGAGAGAAGTTTGAAGGTACA
GATGCTTGCTGAGAAAATCTCACACACCTCCCTTTCATTAAAGAGTAATA
CTTCTCGTTAGTCGTTACCGTATTCTTTCTTTTGTCTGTTTCAGACAGTG
TACTTCTGGGTAAAAACTTGTGTGATCCTGAAGAGCCATATTCCTATCTG
ACAGACAGCTTCTTCTCGGTCTTGGACTGGCATCTGCACATGGTAATTGG
GCGGGCCTTTATCTGGGTTCTCTTTGGACAGGAAAGGGCAGGGTTTGCCC
AGCTTGAATGTGGGCAGGATGAGCATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_i15.g1 MSMg01no494_i15.g1 CHROMAT_FILE:
MSMg01no494_i15.g1 PHD_FILE: MSMg01no494_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:24 2005
         (560 letters)



>mm_chr16_92203906_92204865
          Length = 960

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggattttattccagccccttgacatctctgaaaggtcttcaaggtaaacagttgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ataggattttattccagccccttgacatctctgaaaggtcttcaaggtaaacagttgaaa 701

                                                                       
Query: 61  cgattcaattccaatgctttgaactcgagcaaagataaacagagctgaagaatgcacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cgattcaattccaatgctttgaactcgagcaaagataaacagagctgaagaatgcacatc 641

                                                                       
Query: 121 aaattctaggcagacatagaatcgttcctaaatggaattgtcagattataaatatcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aaattctaggcagacatagaatcgttcctaaatggaattgtcagattataaatatcacac 581

                                                                       
Query: 181 atttggatttcagttagcaccgagaggcacaccctcaatgaagacagatgagagagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atttggatttcagttagcaccgagaggcacaccctcaatgaagacagatgagagagtgaa 521

                                                                       
Query: 241 ctggggagttatggggtaggagccaggatccctgggaaacacgcttcatatcctttccct 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 520 ctggggagttatggggtaggagccaggatccctgggaaacatgcttcatatcctttccct 461

                                                                       
Query: 301 cttgctttctccccaggagcagattaacacacagggagaagttgagtatctgtctggcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttgctttctccccaggagcagattaacacacagggagaagttgagtatctgtctggcac 401

                                                                       
Query: 361 agtacagagagaagtttgaaggtacagatgcttgctgagaaaatctcacacacctccctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agtacagagagaagtttgaaggtacagatgcttgctgagaaaatctcacacacctccctt 341

                                                                       
Query: 421 tcattaaagagtaatacttctcgttagtcgttaccgtattctttcttttgtctgtttcag 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 340 tcattaaagagtaatacttctcgttagtcgttaccatattctttcttttgtctgttttag 281

                                                                       
Query: 481 acagtgtacttctgggtaaaaacttgtgtgatcctgaagagccatattcctatctgacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acagtgtacttctgggtaaaaacttgtgtgatcctgaagagccatattcctatctgacag 221

                               
Query: 541 acagcttcttctcggtcttg 560
           ||||||||||| ||||||||
Sbjct: 220 acagcttcttcgcggtcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)