Query= MSMg01no494_k19.b1 MSMg01no494_k19.b1 CHROMAT_FILE:
MSMg01no494_k19.b1 PHD_FILE: MSMg01no494_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:34 2005
(717 letters)
>mm_chr16_52256076_52257203
Length = 1128
Score = 1282 bits (663), Expect = 0.0
Identities = 702/721 (97%), Gaps = 11/721 (1%)
Strand = Plus / Minus
Query: 8 gaattctactctgtatctattcaccctgtacttctgttaactttatattcttattaggtg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gaattctactctgtatctattcaccctgtacttctgttaactttatattcttattaggtg 869
Query: 68 aatatccttttaattggtatgacttcttgatgtatcaaaatttattattgcagataaaat 127
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 868 aatatccttttaattggtatgacgtcttgatgtatcaaaatttattattgcagataaaat 809
Query: 128 gtaacctaccaatgtgcctcattatgagtttcagattgtcagacattaacacaactatac 187
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 gtaacctaccaatgtgcctcattatgagttttagattgtcagacattaacacaactatac 749
Query: 188 taagcataagtatgcagttttcatttt------tttaactccattcaattatttaactcc 241
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 748 taagcacaagtatgcagttttcatttttttttatttaactccattcaattatttaactcc 689
Query: 242 atgtttaagaagcatctcatatagcatagaacagaaatgcaatgggaaaatgatataatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atgtttaagaagcatctcatatagcatagaacagaaatgcaatgggaaaatgatataatt 629
Query: 302 atatcatgatcccaaaatataaaagcaatacattttagaagtgatgatgctgagatagaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atatcatgatcccaaaatataaaagcaatacattttagaagtgatgatgctgagatagaa 569
Query: 362 tgtgttttcttgattgccatgatttcttgggtgtataaaaactatagttattaaagtata 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgtgttttcttgattgccatgatttcttgggtgtataaaaactatagttattaaagtata 509
Query: 422 tgaatagcatctgataggatatccaggatacccttcctgtctgtgtaatcacagcacctc 481
||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct: 508 tgaatagcatctgataggatatccaggatgcccttcctgtctgtgtgatcgcagcacctc 449
Query: 482 ctgaaatggtggagtat-----cattctagttacgtcattgcagtctaggagttttaact 536
||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 448 ctgaaatcgtggagtatggtatcattctagttacgtcattgcactctaggagttttaact 389
Query: 537 tcccctacatgtgacaggagcaggatgtgacagtagtgtcataaggattagaaggtgaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcccctacatgtgacaggagcaggatgtgacagtagtgtcataaggattagaaggtgaaa 329
Query: 597 attgagatataatgtgttgggttggtcaatgcagtagaataaatggctctgtgctccacc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgagatataatgtgttgggttggtcaatgcagtagaataaatggctctgtgctccacc 269
Query: 657 catattctatccaatatgttatgttatggataaaatataagttaaacatgtcccttattg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catattctatccaatatgttatgttatggataaaatataagttaaacatgtcccttattg 209
Query: 717 t 717
|
Sbjct: 208 t 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1128
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1118
Effective search space: 790426
Effective search space used: 790426
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no494_k19.g1 MSMg01no494_k19.g1 CHROMAT_FILE:
MSMg01no494_k19.g1 PHD_FILE: MSMg01no494_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:34 2005
(646 letters)
>mm_chr16_52139014_52140059
Length = 1046
Score = 1234 bits (638), Expect = 0.0
Identities = 644/646 (99%)
Strand = Plus / Plus
Query: 1 ctgtttcagtttccatggtggataaattaattatttagctatttgcttcattttatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtttcagtttccatggtggataaattaattatttagctatttgcttcattttatcctt 260
Query: 61 ctccaaagatgatttatgtcacagctctatcacagcagccacatccccacacatctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaaagatgatttatgtcacagctctatcacagcagccacatccccacacatctcttt 320
Query: 121 gagggcggtaataaatctcttggtagtttccagcctcatttattttaaatagaactctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggcggtaataaatctcttggtagtttccagcctcatttattttaaatagaactctgg 380
Query: 181 agatacttaaatgaacaagaattattatcagtgtttcttacacagattgataacactaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatacttaaatgaacaagaattattatcagtgtttcttacacagattgataacactaag 440
Query: 241 gtgcagtagtgttagattgtggaaaaggattgaaatttctatcaggaattctaaatgatg 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacagtagtgttagattgtggaaaaggattgaaatttctatcaggaattctaaatgatg 500
Query: 301 ctgctcaagaagacaaaatattaacaaactgtttactggttggcatgcctccttgagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctcaagaagacaaaatattaacaaactgtttactggttggcatgcctccttgagttt 560
Query: 361 gaacgaacatctttttaccatgtttcgtagttacattttccggttaagctgcactcggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacgaacatctttttaccatgtttcgtagttacattttccggttaagctgcactcggct 620
Query: 421 gggacaatgggccattggctatgtgactggggacggcaatatcctacagaccatacctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggacaatgggccattggctatgtgactggggacggcaatatcctacagaccatacctca 680
Query: 481 taacaagcccctgttccaagccctgattgatggtagcagggaaggcttgtaagtatgagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacaagcccctgttccaagccctgattgatggtagcagggaaggcttgtaagtatgagc 740
Query: 541 aattctttcaacttgcaaatttcataactagaaactgtctgggcatagagcataccatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattctttcaacttgcaaatttcataactagaaactgtctgggcatagagcataccatgg 800
Query: 601 gcatagagcaggcgagtaaggctaatgatctcatagtttgcagttt 646
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 gcatagagcaggcgagtaaggctaatgatctcatagtttgcggttt 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
