BAC Information

Click to search

BAC

Clone NameMSMg01-494L23
Chromosome16 (Build37)
Map Location 63,821,086 - 63,821,640
singlet/doubletsinglet
Overlap geneEpha3
Upstream geneArl13b, Stx19, Pros1
Downstream geneLOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494L23.T7 (MSMg01no494_l23.b1)MSMg01-494L23.TJ (MSMg01no494_l23.g1)
ACCAG571954AG571955
length765765
length of high quality
(start - end)
588 (32 - 619)575 (61 - 635)
definitionCHROMAT_FILE: MSMg01no494_l23.b1 PHD_FILE: MSMg01no494_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:40 2005CHROMAT_FILE: MSMg01no494_l23.g1 PHD_FILE: MSMg01no494_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCGTTTTT
TATCGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTCTATCC
ATTCCTCTGTTGAGAGACATCTGGGTTCTTTCCAGCTCCTGGCTATTATA
AATAAGGCTGCTTTGAACATAGTGGAGCATGTGTCCTTATTACATGTTGG
AACATCTTCTGGCTATATGCCCAGGAGTCATATAGATGCGTCCTCAGGTA
GTACTATGTCCAATTTTCTGAGGAACTGCCTGACTGATTTCCAAAGTGGT
TGTACCAGCTTGTAATCCTACCAGTTGTGGAGAAGTGTTCTTCCTTCCCC
ACATCCTCACCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTC
TGACTGGTATGAGGTGGAATCTTAGTGTTGTTTTCATTTGCATTTCCCTG
ATGACTAAGGATGTTGAACATTTCTTTAGATGCTTCTCGGCCATTCGATA
TTTCTCAGTTGAAAATTCTTTGTTTAGCTCTATACCCCATTTTTAAATAG
GGTTACTTGGTTCTCTGGAGTCTAACCTCTTGAATTCTTTGTATACATTG
GATATTAGCCCTCTATTGGGTGTACAGTTGGTAAAAATCTTTTCCCAATC
TTTTGGGTTCCTTTTTGTCCAAATGATAGAGTCTTTTGCCTTACAGAAGC
TTTTTTATTTTATGAGGGCTCATTTGTCTATTCTTGATCGTACAGCATAA
GCCCCTGGTGGATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGGAAATGATAAGTGTTAATGATACAGCAGCAGTGGTACA
GGCTAAATGCAGCTTGGATCACAGCAATCAGCTCATGAGTTCAAGAGGAA
CTGAAATGAAGGATGAGGGGGGGTGCATCTCACGTCGGCAAGACAGTGGG
GGATACATTTGCAGGGGGAGAGAAAAATAATGCTGAAGCTTAGACACAAA
AGAACTGGCTCCTTCCAGGTCAAAATAGAGGGTAGCTAGGATTGAAGTGT
GTAAGGCTTGAGAGAAGATGGTATCACAGTTCACAGAGAGGAGCAGAGCA
GCCTGGTCCCTGTTGGTGATTCTGAAAACGTTGGCTTTTAACCAGAGAGA
AAATAGAAGATCATTAGAAATCATTTTTGATGGAGGAGCAGAGGTTGACT
TGATTAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAAAGT
CTGTTTGACTGGATATGTTTGTGTGTGTATTCCTGTGGCTGATTATGCTC
ATGTGACATGGCACACTTAGATCTTAGTCACTGTCTAGTTACTAGAACTC
ATAAATACATCCTATGTATAAAATATAACAAACATGTGAGCGTCATATTA
GTATAATTCTATACTCACGAAAATGTTCAAATTTTGTAATCAAAGCCTTT
TATTATTCGGGGGGGGGGGGAGACACGTTATTAAATGTGTGCCTACAATC
TTTCTAAAACATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_l23.g1 MSMg01no494_l23.g1 CHROMAT_FILE:
MSMg01no494_l23.g1 PHD_FILE: MSMg01no494_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:40 2005
         (575 letters)



>mm_chr16_63820886_63821860
          Length = 975

 Score =  996 bits (515), Expect = 0.0
 Identities = 550/573 (95%), Gaps = 18/573 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaatgataagtgttaatgatacagcagcagtggtacaggctaaatgcagcttggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaatgataagtgttaatgatacagcagcagtggtacaggctaaatgcagcttggatc 260

                                                                       
Query: 61  acagcaatcagctcatgagttcaagaggaactgaaatgaaggatgagggggggtgcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acagcaatcagctcatgagttcaagaggaactgaaatgaaggatgggggggggtgcatct 320

                                                                       
Query: 121 cacgtcggcaagacagtgggggatacatttgcagggggagagaaaaataatgctgaagct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgtctgcaagacagtgggggatacatttgcagggggagagaaaaataatgctgaagct 380

                                                                       
Query: 181 tagacacaaaagaactggctccttccaggtcaaaatagagggtagctaggattgaagtgt 240
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 381 tagacacaaaagaactggctccttccaggtcaagatagagggcagctaggattgaagtgt 440

                                                                       
Query: 241 gtaaggcttgagagaagatggtatcacagttcacagagaggagcagagcagcctggtccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaggcttgagagaagatggtatcacagttcacagagaggagcagagcagcctggtccc 500

                                                                       
Query: 301 tgttggtgattctgaaaacgttggcttttaaccagagagaaaatagaagatcattagaaa 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttggtgattctgaaaatgttggcttttaaccagagagaaaatagaagatcattagaaa 560

                                                                       
Query: 361 tcatttttgatggaggagcagaggttgacttgattaaaacaaaacaaaacaaaacaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 tcatttttgatggaggagcagaggttgacttgattaaaacaaaacaaaacaaaacaaaa- 619

                                                                       
Query: 421 aaaacaaaacaaaaaaaagtctgtttgactggatatgtttgtgtgtgtattcctgtggct 480
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 -----------------agtctgtttgactggatatgtttgtgtgtgtattcctgtggct 662

                                                                       
Query: 481 gattatgctcatgtgacatggcacacttagatcttagtcactgtctagttactagaactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gattatgctcatgtgacatggcacacttagatcttagtcactgtctagttactagaactc 722

                                            
Query: 541 ataaatacatcctatgtataaaatataacaaac 573
           |||||||||||||||||||||||||||||||||
Sbjct: 723 ataaatacatcctatgtataaaatataacaaac 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)