BAC Information

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BAC

Clone NameMSMg01-494N23
Chromosome16 (Build37)
Map Location 19,612,074 - 19,612,661
singlet/doubletsinglet
Overlap genenone
Upstream geneGp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170
Downstream geneOlfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494N23.T7 (MSMg01no494_n23.b1)MSMg01-494N23.TJ (MSMg01no494_n23.g1)
ACCAG572049AG572050
length782774
length of high quality
(start - end)		589 (31 - 619)605 (60 - 664)
definitionCHROMAT_FILE: MSMg01no494_n23.b1 PHD_FILE: MSMg01no494_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:49 2005CHROMAT_FILE: MSMg01no494_n23.g1 PHD_FILE: MSMg01no494_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGCTAAACGACTCACTATATTCAGAGGATCCGCGGAATTCTTCCTGACT
CTTTCCTGAATATTTCATAAATAATGTCTGCATGTGTTTTTAGACATGTG
ATCATATTTATATTGTTCTTGCTTTTTCTCACTTAATAAAAAATATTCAC
CCTAATCGGTATCATAGACACATAGAAAGAGTTGCCTTGGTCATGGTGTC
TCTTCAAACCAGTGGAAACATCAAGAATGGCACCTGGAAATAATGTCCAA
TCTCTGTGGGCCTCCTGTTGTAGATTGACAAATAGAAGAAATAAAGCAAT
AGTTATAAGACACCATGTGGGGCTGCCTATACTTCTAGTACTTGCAATAC
TGAGGCCAGAGATTTTCATAAGCTGAGTCCAATCGGGTTATAAGCTGAGT
CCAATCGGGCTACATAGTGAGATCTATGCCATCTTGAGTTACCTGTCTCA
AACTTAGAACAAATCATGTAAGGTGTTAATAAAAGATGTTTGCAATCATG
GTTGAAGTTCTGAAATGCATGGAAAAGTTTAAATTAATTATCAGAGTGCT
ACATTCCTTGATTTTTTTTATTAATTAGATAGTTTCTTTATTTACATTTC
AAATGCTATCCCGAAAGTTCCTTATACCCTCCTCCTGCCCTCATTGATAT
TTTTTATTGTTATTTTTGATGATATGATTCTCAGACCCCTTCTTTTTCCA
CAAAGAATGCTACAGTGCACTTATTTTTCCCCCACAGGCCACTACTGCAT
GCCTAGATGACTCTCAAGGGATCCAATTTTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGGAAAGTATTTAATTTCCTTTTTCTTTTTTCTTTTTTGCC
AGTTGATGTAATGCAAGGGTTGTTTTTATTCACAAATCTAATCTTACTTG
AGTGTTTATTCCTGTCTTCACTTATTTTCATTCAATAGAGAGTTCTTCAG
TTTCTGATTTGTAAGCTTTCTGTTGCTTCAGTTGTTTTTGATATCCAGCT
TTAATTCATGGTGCAGTGATATGGTTCAGGGGAGTTATTTTCATTTTCTT
GTGGAAACGTTCTTTGAGTGTGCAGCTGATTTTGGAAAAAAAATTTCTTT
AGGTACATGTATATTCTGTTTTGTTTGCATTGCATTGTCTACAAAGATCT
GTGAGATACATTTGGTTTATAATGTCTGTTAGCTTCAGCATTTCTGATTA
GTTGTTGTTGTTTAGATTACCTATTCATTGGTCTCCCATATCAGTGTGTG
AGCACCAATATGTAATTCAGATTTTAGTAGTATTTCATTTGCCAAGGTGG
GTGTGATTGTGTTTGGGGCATATATATAAAGAATTGAAATGCCTTCTTGG
TAGATTTTACCATTGATGAATATTTATTGTTCTTCACTATTACTTTTTAT
TAATTTACATTTGATGTCTGTTTTGGTAGATATTAAAATGGTTATACCAG
CATACATGTTAGGTGTATTTTCATGAAATATCTTTTTCCAAAACTTTACG
CTGAATTGCTGTCTATTTTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_n23.b1 MSMg01no494_n23.b1 CHROMAT_FILE:
MSMg01no494_n23.b1 PHD_FILE: MSMg01no494_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:49 2005
         (589 letters)



>mm_chr16_19611987_19612975
          Length = 989

 Score = 1048 bits (542), Expect = 0.0
 Identities = 575/588 (97%), Gaps = 4/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttcctgactctttcctgaatatttcataaataatgtctgcatgtgtttttagac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gaattcttcctgactctttcctgaatatttcataaataatgtctgcatgtgtttttagac 616

                                                                       
Query: 66  atgtgatcatatttatattgttcttgctttttctcacttaataaaaaatattcaccctaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atgtgatcatatttatattgttcttgctttttctcacttaataaaaaatattcaccctaa 556

                                                                       
Query: 126 tcggtatcatagacacatagaaagagttgccttggtcatggtgtctcttcaaaccagtgg 185
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcggtatcatagacacatacaaagagttgccttggtcatggtgtctcttcaaaccagtgg 496

                                                                       
Query: 186 aaacatcaagaatggcacctggaaataatgtccaatctctgtgggcctcctgttgtagat 245
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 aaacatcaagaatggcacctagaaataatgtccaatctctgtgggtctcctgttgtagat 436

                                                                       
Query: 246 tgacaaatagaagaaataaagcaatagttataagacaccatgtggggctgcctatacttc 305
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 435 tgacaaatagaagaaataaagcaatagttataagacactatgtgggtctgcctatacttc 376

                                                                       
Query: 306 tagtacttgcaatactgaggccagagattttcataagctgagtccaatcgggttataagc 365
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 375 tagtacttgcaatactgaggccagagattttcataagctgagtccaatcgagttataagc 316

                                                                       
Query: 366 tgagtccaatcgggctacatagtgagatctatgccatcttgagttacctgtctcaaactt 425
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 315 tgagtccaatcgggttacatagtgagatctatgccatcttgagttaactgtctcaaactt 256

                                                                       
Query: 426 agaacaaatcatgtaaggtgttaataaa----agatgtttgcaatcatggttgaagttct 481
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 255 agaacaaatcatgtaaggtgttaataaataagagatgtttgcaatcatggttgaagttct 196

                                                                       
Query: 482 gaaatgcatggaaaagtttaaattaattatcagagtgctacattccttgattttttttat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 195 gaaatgcatggaaaagtttaaattaattatcagagtgctacattccttgatattttttat 136

                                                           
Query: 542 taattagatagtttctttatttacatttcaaatgctatcccgaaagtt 589
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 taattagatagtttctttatttacatttcaaatgctatcccgaaagtt 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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