BAC Information

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BAC

Clone NameMSMg01-495I07
Chromosome16 (Build37)
Map Location 47,219,573 - 47,219,764
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I07.T7 (MSMg01no495_i07.b1)MSMg01-495I07.TJ (MSMg01no495_i07.g1)
ACCAG572543AG572544
length694721
length of high quality
(start - end)
193 (387 - 579)325 (336 - 660)
definitionCHROMAT_FILE: MSMg01no495_i07.b1 PHD_FILE: MSMg01no495_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005CHROMAT_FILE: MSMg01no495_i07.g1 PHD_FILE: MSMg01no495_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGAGNNNNNNNATCTAAAATTTGCGGCGCTAATAGAANATTATATTTCC
GGAGCGGCNGGAANCANGGCATTTTTCCCAAGCCAGCAACNAAGAAAAGC
AACAAGCAANNNCNNCCNNCCCCCATCTCCNCCCCAACAAACGGNCANAA
NNAANNGGGNNNCNCAAGACAAAGTTTCTCTGTGTAGCCAAGGCTGTCCA
GGAACTCCCTCTGTAGAGCAGTCTGGATTTATACTAAGGTATCTTCATGT
TTATGCTTTATTTGAAAGCATATGCCACCACATCTGGCTCAAAATTGGAC
ATCTTTAAACCAAGAAGAAAACTTTTTTTTTTCTAAGANANGNNGGNNAC
CNGAGNCNCNGNGNNAAGTGTATTCCCACCCGCAAGGCACTGGAAGCAAT
GGAGGCATTTTTATTTAATTAATTTGTATATCTATTGGTTGGTCTGCAAA
TCAAGACTATGTAAACCTCAAACTTTCTGCAGCCCACCCAATGCTGTAAT
TCCAGGCATATCCCACTAAGTATACTATGTCGAGGTCTTTTAGATCAGGA
ATGGCTTTTGTGTGCGAGAAAGATGACTACCTTCACTAGTTCAGCCAGAA
GATACCATTGTTCACGGAACAAGAGACATACATGAAATTTTTTCTTTTTT
TTCGAGCNCATCTTAGCCGGGACCGAACTTTTCAGACTTCTTAA
GAAGGAGACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACAAAGAATGGGCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACTTTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAGATCAGTCTGGCGGTTCCTTTTATTATTGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAATTGTATATTATCCCAAAACCTAAGATACCCAAGATATAAGATA
CAATTTCCTAAACACATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i07.b1 MSMg01no495_i07.b1 CHROMAT_FILE:
MSMg01no495_i07.b1 PHD_FILE: MSMg01no495_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:36 2005
         (193 letters)



>mm_chr16_47219373_47219964
          Length = 592

 Score =  335 bits (173), Expect = 1e-96
 Identities = 188/193 (97%), Gaps = 1/193 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcactggaagcaatggaggcatttttatttaattaatttgtatatctattggttggtctg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcactggaagcaatggaggca-ttttatttaattaatttgtatatctattggttggtctg 334

                                                                       
Query: 61  caaatcaagactatgtaaacctcaaactttctgcagcccacccaatgctgtaattccagg 120
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 333 caagtcaagactatgtaaacctcaaactttctgcagtccacccaatgctgtaattccagg 274

                                                                       
Query: 121 catatcccactaagtatactatgtcgaggtcttttagatcaggaatggcttttgtgtgcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 273 catatcccactaagtatactatgtcgaggtcttttagatcaggaatggcttttgcgtgtg 214

                        
Query: 181 agaaagatgacta 193
           |||||||||||||
Sbjct: 213 agaaagatgacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 592
Length adjustment: 8
Effective length of query: 185
Effective length of database: 584
Effective search space:   108040
Effective search space used:   108040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)