BAC Information

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BAC

Clone NameMSMg01-495P11
Chromosome16 (Build37)
Map Location 61,990,510 - 61,990,695
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495P11.T7 (MSMg01no495_p11.b1)MSMg01-495P11.TJ (MSMg01no495_p11.g1)
ACCAG572885AG572886
length733739
length of high quality
(start - end)
186 (130 - 315)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no495_p11.b1 PHD_FILE: MSMg01no495_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005CHROMAT_FILE: MSMg01no495_p11.g1 PHD_FILE: MSMg01no495_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXATTACAGAA
GAGGGCGGAATTCTCCCTTTACCAACAAAAGGTCTTCAGGAGCACAGAAA
GCTACTCTGTCACTCCCTAAAGGCTACACTGATTAGAAGTCACACATCAG
CAGCTGTGATCTTTAGGAAAAAAATGTCTGGCTTGAATAAAATCTGACAG
TAGCTTTTTACAAGGTCTTTTCAAAGTTTGCAGTCAGTGTTAAGTTATTC
TTATTCCAAATCGCATTCATTTTGATTTCTTTGTGAGCAGAACAGACTGG
AATACAGTAGAGGAAGATTAATCTCTTGGGAATAAATGACTGCAAGGTAC
ATCAGAAAAACAGATCCCTACAGTTCATTCATTGTCCCCCTGTCCGTGTC
CCCTGCTGCTCTCTGACCTTTCCTCCCTCCCTCTCTTCCCTCCCTCCCTC
CCTTCCCTCCCTCCCTCTCTTCCCTCCCTTTTTTTTTCCCTCCCTCTTTT
CTTCTTCTTTTCTTCCTTTCTCCTCCCCCTCCCTTCCCTCTTTTTCTCCT
TTTCCCTTTTCTTTTCTTCCCCCCCCTCTTTTTTTTTTTTTTCCCTCTTT
TTTTTTTTTCTTTTTCTTCCCCTCTCCCCCCCTCTTTCTCTTTTTTTTTT
TCCCCNCCTTTCTCCCTCCCCCTTCCCCCTTTTTTTTCCCCCCCTCCTCC
TTTTATTTTTCCCTTTCTTTCCCCTCTCCCTTC
NACGATGAAGTGGGAGGCCTGGNGGNCGCCTGGTTTCATAAAAGAGGTGA
ACTATAGAAGGTTTCAAAAAAATCCTGAGAACTCTTTTGACCATTTAGAA
AAAAAAATGCAGTATTTTTGTAATCAAGCCTGCCTCCCCTCTCATTGATG
TCAAAAAAGGCCATTCTCTGCTACATATGTACATGGAGTATCTCTATATA
TATACTCTTTGGTTTGTGGTTTAACACCTGGGAGCTATTGGATAATCTAT
GTTTTTTGGTATTGTTTTTCTTATGGGGTTACAATCCCCTTAGGGTCCTC
AGTCTTTCCCTTAGTTCTTCCTTTTTGGTCCCAGGGATCAGTTGGCTGTA
AGTATCTTCAGCATATTCAATTCATTCAGGCGAAGAAATAGGAAGAGATC
TTACTTCAGGCCCTGTCCTGCGGTAGACTTTCTTGCGAGTTGCAACATAT
ACATCAGTCATCCCAGTAAGGGAACCCACATCAGACCAAGTAATGATTGG
ACCACTGTCCATCTTGGTGAAACAATAAATTTGTATTGGAGTTACTAAAA
GGACTATTGGTAGAAGATACTTGCAGAATCAGGAATGGCTCATAAGCAGC
CATTGCACTGGAAATACCTGGCCTAACATGAGTGACAATTCACAAAAGCT
TCTATCCAGAGTTTGCCTACACAGTTGCAGGCAGCTCAATTGAAACCCTC
TTCTCTACAGGTTGGCGAGCTAGAGTGACCTCCCTTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_p11.b1 MSMg01no495_p11.b1 CHROMAT_FILE:
MSMg01no495_p11.b1 PHD_FILE: MSMg01no495_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:08 2005
         (186 letters)



>mm_chr16_61990310_61990895
          Length = 586

 Score =  306 bits (158), Expect = 7e-88
 Identities = 179/186 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattagaagtcacacatcagcagctgtgatctttaggaaaaaaatgtctggcttgaata 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgattagaagtcacacatcagcagctgtgatctttagggaaaaaatgtctggcttgaata 260

                                                                       
Query: 61  aaatctgacagtagctttttacaaggtcttttcaaagtttgcagtcagtgttaagttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatctgacagtagctttttacaaggtcttttcaaagtttgcagtcagtgttaagttatt 320

                                                                       
Query: 121 cttattccaaatcgcattcattttgatttctttgtgagcagaacagactggaatacagta 180
           || |  ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaagccaaatcacattcagtttaatttctttgtgagcagaacagactggaatacagta 380

                 
Query: 181 gaggaa 186
           ||||||
Sbjct: 381 gaggaa 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)