Query= MSMg01no495_p12.b1 MSMg01no495_p12.b1 CHROMAT_FILE:
MSMg01no495_p12.b1 PHD_FILE: MSMg01no495_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:08 2005
(506 letters)
>mm_chr16_57439986_57440894
Length = 909
Score = 795 bits (411), Expect = 0.0
Identities = 474/509 (93%), Gaps = 24/509 (4%)
Strand = Plus / Minus
Query: 1 gccctgaatttcagcattgccttatgggaacaaaagcttctataatgttctgttgcacgt 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 736 gccctgaatttcagcattgccttataggaacaaaagcttctataatgttctgttgcgcgt 677
Query: 61 aggtgtgtctgaaagaacaaagacaggacgaggggtctaaggcaggagctgagctgtgac 120
||||||||| ||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 676 aggtgtgtccgaaagaacaaagacaagacaaggggtctaaggcaggagct---------- 627
Query: 121 ctcggtctagaaggctgtgacctcggtctagaaggctgtgacctcggtctagaaggctgt 180
|| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ----------aa-gttgtgacctcggtctagaaggctgtgacctcggtctagaaggctgt 578
Query: 181 gacttcggtctagaaagctgtccctgccccattaagcacggccttgcgcagagcagtgaa 240
||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 577 gacttcggtctagaaggctgtccctgccccattaagcagggccttgagcagagcagtgaa 518
Query: 241 tttggtttgcttgcgtttttaaggtcttaaaacacttaaaactgaatagacttaaaactg 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttgggttacttgcgtttttaaggtcttaaaacacttaaaactgaatagacttaaaactg 458
Query: 301 aatatctgggaatttcagagaacaaattag---aaaaaaaaacaatgatttgcatgttaa 357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 457 aatatctgggaatttcagagaacaaattagaaaaaaaaaaaacaatgatttgcatgttaa 398
Query: 358 agaagaaattcagtaccttatggaaggaactttgtccttttatatacttatttttaaatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaagaaattcagtaccttatggaaggaactttgtccttttatatacttatttttaaatt 338
Query: 418 tattttattattgtagaccaggctggccttgagttcacagagatccgaatacatttgttt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tattttattattgtagaccaggctggccttgagttcacagagatccgaatacatttgttt 278
Query: 478 ctcaagcactagggttaaaactgtgtgcc 506
|||||||||||||||||||||||||||||
Sbjct: 277 ctcaagcactagggttaaaactgtgtgcc 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 909
Length adjustment: 10
Effective length of query: 496
Effective length of database: 899
Effective search space: 445904
Effective search space used: 445904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_p12.g1 MSMg01no495_p12.g1 CHROMAT_FILE:
MSMg01no495_p12.g1 PHD_FILE: MSMg01no495_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:09 2005
(161 letters)
>mm_chr16_57395545_57396105
Length = 561
Score = 304 bits (157), Expect = 2e-87
Identities = 160/161 (99%)
Strand = Plus / Plus
Query: 1 accaggccaggtggtcactgagaaacgtctgtctgtgtcagaccgagtccctaatgcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaggccaggtggtcactgagaaacgtctgtctgtgtcagaccgagtccctaatgcact 260
Query: 61 taatccaaaggcctggagaagtggggtgacagaggtaggctcgcagttgtactttagctg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 taatccaaaggcctggagaagtggggtgacagaggtaggctcgaagttgtactttagctg 320
Query: 121 agaatttggtgcctaattctaaagtatgatccatacattat 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatttggtgcctaattctaaagtatgatccatacattat 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space: 84609
Effective search space used: 84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
