BAC Information

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BAC

Clone NameMSMg01-496A16
Chromosome16 (Build37)
Map Location 51,058,870 - 51,059,202
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A16.T7 (MSMg01no496_a16.b1)MSMg01-496A16.TJ (MSMg01no496_a16.g1)
ACCAG572943AG572944
length753770
length of high quality
(start - end)
564 (48 - 611)479 (75 - 553)
definitionCHROMAT_FILE: MSMg01no496_a16.b1 PHD_FILE: MSMg01no496_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:14 2005CHROMAT_FILE: MSMg01no496_a16.g1 PHD_FILE: MSMg01no496_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCCTATTCACTCCCATTCTCGAGGTGTAATAGTGGGGTGAT
GGGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGT
CACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCAGGATCTTCC
TGAGAAGCAAGCAATAAAGCTTTTGCCACGGAAGATTCTGGTTTGTTGCG
TCTTTCTTGCCGGTCGAGCGGGACGCAATAAGTACTCATTCTGCTAGGAG
TAGAAAAAGAAGGGACATGCAAATTTCTATCAAAGCAACTCATAAAAAGC
AACATGTTTAAGATGGAAATTCCCGAGTTGACGGAATTATAATTATATTA
CATGCTTCAAGATCTATTCAATATTACTCTTTGACAAACTTTTCAGTAGT
TTAAAAATGCAGAAGCTAATTAAAACTGCCTGCAACCTGAACACTGACAT
GAACACTGGAAACTAGATAAACAGAGGATAATGAATAGGAAGCACAGCAG
GAGTGATTAACATACTTGTGGGTTTCATTTGGGGGAGTAAATTTCAGCAG
AATAAATGTAANCATAAATAGTAAAGACAAACATGTCTTATTCAGAGATT
GAATTTGTACTTTGGGATACATTGTAAATGCTACCATATAAGACATTAAT
CTGCTAAAAAAAGTACCCTGTGATAAAATGATTAANGGCTCATTAGGATG
AGN
CCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCAGA
GAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGAAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTTGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAAAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATTAGT
GGATATTAGCCCAAACCTANGATACCCAAGAATAAGAAACAATTTCTAAA
CACATGAAACTCAAAAAAAATGAAGACTGGAATGGGACACTATGCCCCTC
CTTAAAAGGGGAGCAAACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a16.b1 MSMg01no496_a16.b1 CHROMAT_FILE:
MSMg01no496_a16.b1 PHD_FILE: MSMg01no496_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:14 2005
         (564 letters)



>mm_chr16_51058439_51059402
          Length = 964

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%), Gaps = 2/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 232 taagtactcattctgctaggagtagaaaaagaagggacatgcaaatttctatcaaagcaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taagtactcattctgctaggagtagaaaaagaagggacatgcaaatttctatcaaagcaa 491

                                                                       
Query: 292 ctcataaaaagcaacatgtttaagatggaaattcccgagttgacggaattataattatat 351
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 492 ctcataaaaagcaacatgtttaagatggaaattcccgagttgacagaattataattatat 551

                                                                       
Query: 352 tacat-gcttcaagatctattcaatattactctttgacaaacttttcagtagtttaaaaa 410
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tac-tcgcttcaagatctattcaatattactctttgacaaacttttcagtagtttaaaaa 610

                                                                       
Query: 411 tgcagaagctaattaaaactgcctgcaacctgaacactgacatgaacactggaaactaga 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgcagaagctaattaaaactgcctgcaacctgaacactgacatgaacactggaaactaga 670

                                                                       
Query: 471 taaacagaggataatgaataggaagcacagcaggagtgattaacatacttgtgggtttca 530
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 671 taaacagaggataatgaataggaagcgcagcaggagtgattaacatacttgtgggtttca 730

                                             
Query: 531 tttgggggagtaaatttcagcagaataaatgtaa 564
           ||||||||||||||||||||||||||||||||||
Sbjct: 731 tttgggggagtaaatttcagcagaataaatgtaa 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)