BAC Information

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BAC

Clone NameMSMg01-496A17
Chromosome16 (Build37)
Map Location 51,058,870 - 51,059,324
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A17.T7 (MSMg01no496_a17.b1)MSMg01-496A17.TJ (MSMg01no496_a17.g1)
ACCAG572945AG572946
length765760
length of high quality
(start - end)
685 (48 - 732)602 (76 - 677)
definitionCHROMAT_FILE: MSMg01no496_a17.b1 PHD_FILE: MSMg01no496_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:15 2005CHROMAT_FILE: MSMg01no496_a17.g1 PHD_FILE: MSMg01no496_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCCTATCCACTCCCATTCTCGAGGTGTAATAGTGGGGTGAT
GGGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGT
CACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCAGGATCTTCC
TGAGAAGCAAGCAATAAAGCTTTTGCCACGGAAGATTCTGGTTTGTTGCG
TCTTTCTTGCCGGTCGAGCGGGACGCAATAAGTACTCATTCTGCTAGGAG
TAGAAAAAGAAGGGACATGCAAATTTCTATCAAAGCAACTCATAAAAAGC
AACATGTTTAAGATGGAAATTCCCGAGTTGACGGAATTATAATTATATTA
CATGCTTCAAGATCTATTCAATATTACTCTTTGACAAACTTTTCAGTAGT
TTAAAAATGCAGAAGCTAATTAAAACTGCCTGCAACCTGAACACTGACAT
GAACACTGGAAACTAGATAAACAGAGGATAATGAATAGGAAGCACAGCAG
GAGTGATTAACATACTTGTGGGTTTCATTTGGGGGAGTAAATTTCAGCAG
AATAAATGTAACAATAAATAGTAAAGACAAACATGTCTTATTCAGAGATT
GAATTTGTACTTTGGGATACATTGTAAATGCTACCATATAAGACATTAAT
CTGCTAAAAAAAGTACCCTGTGATAAAATGAATAANGGCTCATTAGGATG
AGTTATTAGGGATGG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCAG
AGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGAAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATATTTTTTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTTGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAAAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTATG
CCCCTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a17.b1 MSMg01no496_a17.b1 CHROMAT_FILE:
MSMg01no496_a17.b1 PHD_FILE: MSMg01no496_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
         (685 letters)



>mm_chr16_51058439_51059524
          Length = 1086

 Score =  835 bits (432), Expect = 0.0
 Identities = 450/456 (98%), Gaps = 3/456 (0%)
 Strand = Plus / Plus

                                                                       
Query: 232 taagtactcattctgctaggagtagaaaaagaagggacatgcaaatttctatcaaagcaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taagtactcattctgctaggagtagaaaaagaagggacatgcaaatttctatcaaagcaa 491

                                                                       
Query: 292 ctcataaaaagcaacatgtttaagatggaaattcccgagttgacggaattataattatat 351
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 492 ctcataaaaagcaacatgtttaagatggaaattcccgagttgacagaattataattatat 551

                                                                       
Query: 352 tacat-gcttcaagatctattcaatattactctttgacaaacttttcagtagtttaaaaa 410
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tac-tcgcttcaagatctattcaatattactctttgacaaacttttcagtagtttaaaaa 610

                                                                       
Query: 411 tgcagaagctaattaaaactgcctgcaacctgaacactgacatgaacactggaaactaga 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgcagaagctaattaaaactgcctgcaacctgaacactgacatgaacactggaaactaga 670

                                                                       
Query: 471 taaacagaggataatgaataggaagcacagcaggagtgattaacatacttgtgggtttca 530
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 671 taaacagaggataatgaataggaagcgcagcaggagtgattaacatacttgtgggtttca 730

                                                                       
Query: 531 tttgggggagtaaatttcagcagaataaatgtaacaataaatagtaaagacaaacatgtc 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttgggggagtaaatttcagcagaataaatgtaacaataaatagtaaagacaaacatgtc 790

                                                                       
Query: 591 ttattcagagattgaatttgtactttgggatacattgtaaatgctaccatataagacatt 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttattcagagattgaatttgtactttgggatacattgtaaatgctaccatataagacatt 850

                                               
Query: 651 aatctgctaaaaaaag-taccctgtgataaaatgaa 685
           |||||||||||||||  |||||||||||||||||||
Sbjct: 851 aatctgctaaaaaaaactaccctgtgataaaatgaa 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)