Query= MSMg01no496_e16.b1 MSMg01no496_e16.b1 CHROMAT_FILE:
MSMg01no496_e16.b1 PHD_FILE: MSMg01no496_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:34 2005
(598 letters)
>mm_chr16_12135676_12136673
Length = 998
Score = 998 bits (516), Expect = 0.0
Identities = 569/594 (95%), Gaps = 12/594 (2%)
Strand = Plus / Plus
Query: 5 gaattcagaagtattgctagcacctattctgtagaagaaaatgaggcttcccatagaagt 64
||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaagcattgctagaacatattctgtagaagaaaatgaggcttcccatagaagt 264
Query: 65 tacccaaataaggttttgaatttgcgttggttgggtccagagcacaggctttaaatgttg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tacccaaataaggttttgaatttgcgttggttgggtccagagcacaggcttttaatgttg 324
Query: 125 atgttgagagattatgtaatcctggttccaagtttgttcatgatacttagaaactgtatg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgttgagagattatgtaatcctggttccaagtttgttcatgatacttagaaact----- 379
Query: 185 gccttgggtaaaggacaaaggtgaacattagtttcttcatctatagaaaggaagcaaaaa 244
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 -------gtaaaggacaaaagtgaacattagtttcttcagctatagaaaggaagcaaaaa 432
Query: 245 tatgctcctctgttgaagcatggggtttagacatgtatataaagagccaagtgagttccc 304
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 433 tatcctcctctgttgaagcatggggttttgacatgtatataaagagccaagtgagttccc 492
Query: 305 aatgtatagctggtgcccatgaaggccaactcttacagttaatggttactagtgttcagt 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatgtatagctggtgcccgtgaaggccaactcttacagttaatggttactagtgttcagt 552
Query: 365 tctaatgcagatgaacatctctgacgtgctgaggtcccactaaagtctcagaaactcaaa 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctaatacagatgaacatctctgacgtgctgaggtcccactaaagtctcagaaactcaaa 612
Query: 425 gaatcactcctttccccatcctggctgactctatactttctctttataaaagcttgaaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 613 gaatcactcctttccccatcctggctgactctatactttctctttataaaattttgaaac 672
Query: 485 ttatggctggaatgatggcttaaaggttaagagtactggccctcttccagaggacctggg 544
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttatggctggaatggtggcttaaaggttaagagtactggccctcttccagaggacctggg 732
Query: 545 ttctactcccagaacccacatgatagcacataatgctctacaactttactttca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttctactcccagaacccacatgatagcacataatgctctacaactttactttca 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_e16.g1 MSMg01no496_e16.g1 CHROMAT_FILE:
MSMg01no496_e16.g1 PHD_FILE: MSMg01no496_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:35 2005
(554 letters)
>mm_chr16_12298325_12299278
Length = 954
Score = 1017 bits (526), Expect = 0.0
Identities = 547/558 (98%), Gaps = 8/558 (1%)
Strand = Plus / Minus
Query: 1 actagagggctttgtgaagggcagcatctggtgttttgacttttacagaaactgttggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 actagagggctttgtgaagggcagcatctggtgttttgacttttacagaaactgttggtg 695
Query: 61 tcttccccattctttccaggcataaagcatatcagacgtggttttctccctttggtgatt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 694 tcttccccattctttccaggcataaagcatatcagacctggttttctccctttggtgatt 635
Query: 121 gacagtttgttgtgtttgctagattgtttggcggcatttgagggtgtcgggagcattgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gacagtttgttgtgtttgctagattgtttggcggcatttgagggtgtcgggagcattgtt 575
Query: 181 ttcttctccttctaaacctcaaagagaactcctttctcttatctccattttccaagactc 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 574 ttcttctccttctaaacctcaaagagaactcctgtctcttatctccattttccaagactc 515
Query: 241 tatc----ttttggacccacctgggctggctgatttaattaatgtctacattatctatct 296
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tatcgagg----ggacccacctgggctggctgatttaattaatgtctacattatctatct 459
Query: 297 gctgcttttgaagctgttgtcacgttgttgatattaaagctgcactggggcatgcctgaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gctgcttttgaagctgttgtcacgttgttgatattaaagctgcactggggcatgcctgaa 399
Query: 357 ggctagctttgccaacagacccactgacatcgtcagccacagaatagaggagggaggcaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggctagctttgccaacagacccactgacatcgtcagccacagaatagaggagggaggcaa 339
Query: 417 gagatgttctgatttgggggaataatttatttcttctcctaaaaaatttggccacagatg 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 338 gagatgttctgatttgggggaataatttatttcttcttctaaaaaatttggccacagatg 279
Query: 477 cattctaatctcagcaatgctgcatcaatattctcattctctttgtcataatcctctgaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cattctaatctcagcaatgctgcatcaatattctcattctctttgtcataatcctctgaa 219
Query: 537 gctcacgaaagtcgcagt 554
||||||||||||||||||
Sbjct: 218 gctcacgaaagtcgcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
