BAC Information

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BAC

Clone NameMSMg01-496F05
Chromosome16 (Build37)
Map Location 21,191,586 - 21,192,199
singlet/doubletsinglet
Overlap genenone
Upstream geneYeats2, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik
Downstream geneEphb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F05.T7 (MSMg01no496_f05.b1)MSMg01-496F05.TJ (MSMg01no496_f05.g1)
ACCAG573158AG573159
length7441,071
length of high quality
(start - end)		614 (70 - 683)---
definitionCHROMAT_FILE: MSMg01no496_f05.b1 PHD_FILE: MSMg01no496_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005CHROMAT_FILE: MSMg01no496_f05.g1 PHD_FILE: MSMg01no496_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCTGCCTACTACTATTTGAGCCTAGACAAC
GCACTTTCCACCTGTGAGGCTTCTTGTCCTTCCTTAAGAAGCTGGGACAA
TAATTAGCCCACAGTGCAGTGGTGAGCAGTCACAGGGCCGTCTCCAGAGC
CATGCTCATTCTTCTCGCCTCTGACCCTCTAACAAAAGCTCCCGGACTCC
AGTCTCAGCACCGAGTAAATCTGCTAATGTGCCAGTGGGTATAGACGAAT
GCATGTAGCCCTCGGGGGAGCATGTGGTTAACACGTGTGCATTTTAATGG
GGGTTCTTTTACAGCGGTTCTAATGCTCCGTGGATAGTCTGGGGCCGTGA
GGGTTGTTCTCTCAAGTTGTAAACTCGCTGCTACTGGTTCCGCCTTCTTC
TGAGTCTGCTCTACAAGGAGTTGGGGGTGTGGTGCATGTGCAGGGTATGC
ACGCACTGTTTATTTGGAAAAGCTTGATTACGTTTGGAATCACCTAGGAG
ACACATTTTGAGATTTGTGAGGGTGTTTCTAGAGAGGTTTAAGTGAGGAG
GAAACACACTGATTGTGGGTAGCACCATCAAATGGACAATGGTCCCAGAC
CAAATATAAAGGGGAAAGAGGGGCTGGCGAGAGATGGCTCANTGGTTAAG
AGCACTGACTGGCCGGGCGGTGGTGGGGCACGCCTTTAATCCAG

ATTTCAATTTATCACGCCGCGGTTATATTTGGCCGTTGTCATTTTCCTCT
TTTCATCCTAGTATTCATACATTCCCTCCCATATCCTCTTATTGCTATAC
TCCTATTCTAAATATTTAATACTTAATGCTATATCATAATCCTATACTTA
TAACAACAATATTTAATCCTCTCTCTACACTATCATGTGTCGACATATCT
CCATCTTCTTTTTACNCCCTTCAGCCTACACCTCCGCTACACCCACCTCC
GTTTACCATGCCCACCTACCACATTACAATCCCCTAAACAGCCACATGAA
TCTACACACACACCGATAATTAAACACTCTTCTCCTCCTTCTCTCTCTCT
TCCCACTTACATTTTATATCCGCTCCTATATTTGTTACCCCACGCCCCCT
AACCACCTCATACACTCCTTCCTTCTCTTTTCCCCCCCCATTCTATCATC
ATCACTCTTCCTCACTCTATCTTCCACAATTTATTACACACCCACACACA
TCGCCAACTTATCTCAATTTTTCCTCTTTCTTAATCTCTTTACTATATTT
ACCATATACATTCTCCACTTCATCTTTCATCTCTATTACTCATAGTTCCC
TCTCCACAACTACTTCTCTCCCCCATTTATATCACATCCCTCACTATTAT
CATATATATATAATCTCCTACTCCCCTGCTACACCAATATTTAATATCCT
CCTCTTATAATCTACCGCATTCTCCACCTATCTTATTCTTACTCTCCAAC
ACCCCCCTCACATTTATATCTCTCTCGCATCTCTCAACACCAACATATCA
ACACACCTCACCCCCTCCCCCCATCAATTATATATCCCTTCATATCCAAC
ATCACTACAAATACGTTCACAATATTCTCACTCCACCCTATACACCCTAT
ATCATTCACCCCCCACACCCACTCACAATAATATCTAATTCCATTACCAT
TCCACATATATTTTGTATTATATAATATTACANCATAATAACTCCTCGTT
ACTCCCAACACCCCTACGACCTCCTATGCCTATATTCTATTATATTCCCC
TAATTCACTACACCTCCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f05.b1 MSMg01no496_f05.b1 CHROMAT_FILE:
MSMg01no496_f05.b1 PHD_FILE: MSMg01no496_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:37 2005
         (614 letters)



>mm_chr16_21191386_21192399
          Length = 1014

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgcctactactatttgagcctagacaacgcactttccacctgtgaggcttcttgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctctgcctactactatttgagcctagacaacgcactttccacctgtgaggcttattgtcc 260

                                                                       
Query: 61  ttccttaagaagctgggacaataattagcccacagtgcagtggtgagcagtcacagggcc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttaagaagctgggacaataattagcccacagtgcagtggtgagcagtcacagggcc 320

                                                                       
Query: 121 gtctccagagccatgctcattcttctcgcctctgaccctctaacaaaagctcccggactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctccagagccatgctcattcttctcgcctctgaccctctaacaaaagctcccggactc 380

                                                                       
Query: 181 cagtctcagcaccgagtaaatctgctaatgtgccagtgggtatagacgaatgcatgtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtctcagcaccgagtaaatctgctaatgtgccagtgggtatagacgaatgcatgtagc 440

                                                                       
Query: 241 cctcgggggagcatgtggttaacacgtgtgcattttaatgggggttcttttacagcggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgggggagcatgtggttaacacgtgtgcattttaatgggggttcttttacagcggtt 500

                                                                       
Query: 301 ctaatgctccgtggatagtctggggccgtgagggttgttctctcaagttgtaaactcgct 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaatgctccgtggattgtctggggccgtgagggttgttctctcaagttgtaaactcgct 560

                                                                       
Query: 361 gctactggttccgccttcttctgagtctgctctacaaggagttgggggtgtggtgcatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 gctactggttccgccttcttctgagtctgctctacaaggagttgggggtgtggtgcatgc 620

                                                                       
Query: 421 gcagggtatgcacgcactgtttatttggaaaagcttgattacgtttggaatcacctagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagggtatgcacgcactgtttatttggaaaagcttgattacgtttggaatcacctagga 680

                                                                       
Query: 481 gacacattttgagatttgtgagggtgtttctagagaggtttaagtgaggaggaaacacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacacattttgagatttgtgagggtgtttctagagaggtttaagtgaggaggaaacacac 740

                                                                       
Query: 541 tgattgtgggtagcaccatcaaatggacaatggtcccagaccaaatataaaggggaaaga 600
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 tggttgtgggtagcaccatcaaatggacaatggtcccagaccaaataaaaaggggaaaga 800

                         
Query: 601 ggggctggcgagag 614
           |||||||| |||||
Sbjct: 801 ggggctggagagag 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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