NNNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTATTGCTCCACTTGAGAAAGTGCAATGTGAAAGG
TGAAATCCAGGGCTGGAGTTCATTTTAATAATAAATTCTAACATTCTTTG
ATATCCAGATCACTGCATTTAAAAAAAAAAAAAGTAAACTATGTGTATGT
GTAGCAGGAATGGCGGGTTTACCTCTGTGTACACAGCCACAAAAGTATCT
CCTTCAGGAGGACCTAAATGAGGACTGCTTGAGAGACCAAGGATTGCTAG
TGCAAACAAAGCCAGCCAATGAGGAACTGCTGTTAGAAATATTTTCTTGG
GACCAATGGAGACGTGAGTGGAGGGTATTAAAATAGCTTACAGTAGTGCT
CAGATGAGTTTGCTGCAGTTTTCCATCTGCTCGCGGAGTCTGAATCCTTG
ACTCAGTGCCAACTCACTTCCAACCCCCAAGGGCAGAAAGGGTCGGGCAG
AGAGCTGTCCAGGGCACAGGCAATATATATGAAATGTGTCAATTATTGCA
AAGTATGAAAATATAAGAGAAAGGAAACCTGTCTTCTGAATAATTGATTT
TTTTTTGCTGTTAAAAGATATTTTGCACCCTTCCAATAAACTTTTTAAAT
GTTCAAATATTGTAGGTAAAACTAGATTATACTCATAATGAAAACCAGTG
TGAATTGAGGCAAATAGCTTCTGAGTACCTACTTTTGG

GAAGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAATTGGGATTTATGGCT
TCTGGAAAAAGGAGAGTTGCTTTTCTTCAGGGATACAAACTCAGAGAGAC
TAACCATGCCCTGATGGACCAAAACCTATGCACATAGAAGAAGGGCTAAA
CGGGCATCTGTAAACAAAAACAAAACAAAACAAAACAAAAAACAAAAACA
AAAACAAAAAAAAACGGTGGGGGAGAGAAACCAATTTGGGAGGGAATGGT
CATAGTAGATATGGGATAAATTATAAAGGAGGGAATAGAGTATGAACTTG
CAGAACATATTATATAAATCTATAAAAAGTCTGCCAGAGCCTGACAAATA
CAGAGGTGGATGCTCACAGCCAACCATTGGACTAAGCACAGGGTTTCCAG
TAAAGGAGTTAGAGAAAGGACTGAAGGAGCTAAAGGGGTTTGCAATCCCA
TAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCCAGGGA
CTAAACCACCAATAAAAGAGTACACATGGAGGGACCCATGGCTCCAGCCG
CATATGTAGCAGAGGATGGCCCTGTTGGACATCAATGGGAGGAGAGGCCC
TTGGTCCTGTGACCAAGGCTCAATGCCCCAATGTCGGGGAATGCCAGGAG
CCCGAAGTGGGANTGGGTGGNTTGGGTGGAGGAACAC

Query= MSMg01no496_k02.b1 MSMg01no496_k02.b1 CHROMAT_FILE:
MSMg01no496_k02.b1 PHD_FILE: MSMg01no496_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:01 2005
         (661 letters)



>mm_chr16_72243880_72244939
          Length = 1060

 Score = 1178 bits (609), Expect = 0.0
 Identities = 645/659 (97%), Gaps = 5/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctattgctccacttgagaaagtgcaatgtgaaaggtgaaatccagggctggag 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatagatccacttgagaaagtgcaatgtgaaaggtgaaatccagggctggag 264

                                                                       
Query: 65  ttcattttaataataaattctaacattctttgatatccagatcactgcatttaaaaaaaa 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcatttgaataataaattctaacattctttgatatccagatcactgcatttaaaaaaaa 324

                                                                       
Query: 125 aaaaa--gtaaactatgtgtatgtgtagcaggaatggcgggtttacctctgtgtacacag 182
           |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 aaaaaaagtaaactatgtgtatgtgtagcaggaatggcggggttacctctgtgtacacag 384

                                                                       
Query: 183 ccacaaaagtatctccttcaggaggacctaaatgaggactgcttgagagaccaaggattg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacaaaagtatctccttcaggaggacctaaatgaggactgcttgagagaccaaggattg 444

                                                                       
Query: 243 ctagtgcaaacaaagccagccaatgaggaactgctgttagaaatattttcttgggaccaa 302
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 ctagtgcaaacaatgccagctaatgaggaactgctgttagaaatattttcttgggactaa 504

                                                                       
Query: 303 tggagacgtgagtggagggtattaaaatagcttacagtagtgctcagatgagtttgctgc 362
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggaggcgtgagtggagggtattaaaatagcttacagtagtgctcagatgagtttgctgc 564

                                                                       
Query: 363 agttttccatctgctcgcggagtctgaatccttgactcagtgccaactcacttccaaccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttttccatctgctcgcggagtctgaatccttgactcagtgccaactcacttccaaccc 624

                                                                       
Query: 423 ccaagggcagaaagggtcgggcagagagctgtccagggcacaggcaatatatatgaaatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaagggcagaaagggtcgggcagagagctgtccagggcacaggcaatatatatgaaatg 684

                                                                       
Query: 483 tgtcaattattgcaaagtatgaaaatataagagaaaggaaacctgtcttctgaataattg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtcaattattgcaaagtatgaaaatataagagaaaggaaacctgtcttctgaataattg 744

                                                                       
Query: 543 atttttttttgctgttaaaagatattttgcacccttccaataaactttttaaatgttcaa 602
           |||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||
Sbjct: 745 atttttttttgctgttaaaag---tttggcacccttccaataaactttttaaatgttcaa 801

                                                                      
Query: 603 atattgtaggtaaaactagattatactcataatgaaaaccagtgtgaattgaggcaaat 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atattgtaggtaaaactagattatactcataatgaaaaccagtgtgaattgaggcaaat 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)