BAC Information

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BAC

Clone NameMSMg01-497D10
Chromosome16 (Build37)
Map Location 20,273,669 - 20,274,275
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1
Downstream geneParl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497D10.T7 (MSMg01no497_d10.b1)MSMg01-497D10.TJ (MSMg01no497_d10.g1)
ACCAG573836AG573837
length750755
length of high quality
(start - end)
610 (77 - 686)665 (82 - 746)
definitionCHROMAT_FILE: MSMg01no497_d10.b1 PHD_FILE: MSMg01no497_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:49 2005CHROMAT_FILE: MSMg01no497_d10.g1 PHD_FILE: MSMg01no497_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAAATTATAACXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGA
TCCGCGGAATTCTCTATTTTCCGGTACAACCCCACCCCCGCCCCCACCTA
CTCAGCAAGTCACAGTCTTCTCACTGTTGGATTAATGATCTTACTTTCTG
TATGAATACTGTTCTGGGATTCAGGCTCTGCAGGAGTGTGAAAGGCCTTT
CCTGTTGGTCATCTATCTTTATGTGCTGTCAGTGTTTGTCTGGCTACCAC
CCATGCATCCAGGGAGCCTACGTAGCTTGTTCCAGGTAAGGGGTGGGTGG
TGGTGCCATTTTCTCTGACTGTTTGGTGTCAGATGCAATATCCCTAGCTC
TCCATCTGCCTCTTTATTTGGTGCTCGCTCTGCTCCAGCCAGCTGTGTAT
TCCTAACTCTGTCTCTTGGCTGTTAAATGGCAGCTGTCTTCTTTCTCTAG
TTCTCCTCCCTTTCCTGAAAGCACTTCATTGCAACCATAGCAAGTTCTGT
CATTTAGATCCAGATGTGTGACACTCTGCACAGGTGAGGACAGTGACCCA
TGGCCTGCTTTAGTCCAATGCCATACACACATAGTATGGTCTCTAGCTGC
TTTTGCGAAGCCCACACTAATTTGGGAAAATCAGGTCCATGTGTTTGATG
AAGGCTCTCTGTATTGCCCCAGGTGAGTTTTACTCAAGGGTTAGGTTGCT
GAAGCTCATGATAACACAAAAGTTCCCCTAAGATAGTGGCTATGAATTCN

NNTTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTACCCACAAGAATTCAATCAAAGACTCAGAAA
TAAACCCATACACCTATGGACACTTGATTTTTGATAAAGAGGCCAAAACT
ATACAATGGAAAATGAAAGCATCTTCAACAAATGGTCCTGGACTAACTGG
ATGTCTACATGTAGAAGAAACTATATCCACACTTATCACCCTGCAAAAAA
CCGCCAGTCTAAGTGGATTAAGGACCTCAGCATAAAACTGAATACACGAA
ATCTTATAGAAGAGAAAGAGGGAATTATCTTTGAATGCATTGGCACAAGA
GACAATTTTCTGAACAGAACTCCAATGGCTCAGGCTCTATGATCAATTGA
TAAATGGCACCTCAGGAAACTGCTATAAGGCAAAGGACAATGTCAATAAG
ACAAAATATCAACCTACTGATTGGGAAAGAATCTTCCCCTATCCTACATC
TGAGAGAGGGCTAATATCCAAAATTTACAAAGCACTCAAGAAGTTAGACA
CCCATAACCCAAATAACCCAATGAAAAAATTGGGTTATTTGGGTTATGGG
CACAGAGCTAAACAGACTTTTCAACAGAGGAATCTCAAATGGTGGCGAAA
CACTTAAGAAATGTTCTAAGTCCTTCACTATCCTGGAGATGCAAATCAAA
ACAATTCTGAGATAACATCTTATACCAACCAGAATGGCTAAAATAAAAAA
AAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_d10.b1 MSMg01no497_d10.b1 CHROMAT_FILE:
MSMg01no497_d10.b1 PHD_FILE: MSMg01no497_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:49 2005
         (610 letters)



>mm_chr16_20273469_20274475
          Length = 1007

 Score = 1110 bits (574), Expect = 0.0
 Identities = 600/610 (98%), Gaps = 3/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccccacccccgcccccacctactcagcaagtcacagtcttctcactgttggattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccccacccccgcccccacctactcagcaagtcacagtcttctcactgttggattaat 260

                                                                       
Query: 61  gatcttactttctgtatgaatactgttctgggattcaggctctgcaggagtgtgaaaggc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcttactttctgtatgaatagtgttctgggattcaggctctgcaggagtgtgaaaggc 320

                                                                       
Query: 121 ctttcctgttggtcatctatctttatgtgctgtcagtgtttgtctggctaccacccatgc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcctgctggtcatctatctttatgtgctgtcagtgtttgtctggctaccacccatgc 380

                                                                       
Query: 181 atccagggagcctacgtagcttgttccaggtaaggggtgggtggtggtgccattttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagggagcctacgtagcttgttccaggtaaggggtgggtggtggtgccattttctct 440

                                                                       
Query: 241 gactgtttggtgtcagatgcaatatccctagctctccatctgcctctttatttggtgctc 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggctggtgtcagatgcaatatccctagctctccatctgcctctttatttggtgctc 500

                                                                       
Query: 301 gctctgctccagccagctgtgtattcctaactctgtctcttggctgttaaatggcagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctgctccagccagctgtgtattcctaactctgtctcttggctgttaaatggcagctg 560

                                                                       
Query: 361 tcttctttctctagttctcctccctttcctgaaagcacttcattgcaaccatagcaagtt 420
            |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttctttctctagttctcc---ctttcctgaaagcacttcattgcaaccatagcaagtt 617

                                                                       
Query: 421 ctgtcatttagatccagatgtgtgacactctgcacaggtgaggacagtgacccatggcct 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 618 ctgtcatttagatccagatgtgtgacactctgcacaagtgaggacagtgacccgtggcct 677

                                                                       
Query: 481 gctttagtccaatgccatacacacatagtatggtctctagctgcttttgcgaagcccaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gctttagtccaatgccatacacacatagtatggtctctagctgcttttgcgaagcccaca 737

                                                                       
Query: 541 ctaatttgggaaaatcaggtccatgtgtttgatgaaggctctctgtattgccccaggtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctaatttgggaaaatcaggtccatgtgtttgatgaaggctctctgtattgccccaggtga 797

                     
Query: 601 gttttactca 610
           ||||||||||
Sbjct: 798 gttttactca 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1007
Length adjustment: 10
Effective length of query: 600
Effective length of database: 997
Effective search space:   598200
Effective search space used:   598200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)