Query= MSMg01no498_j13.b1 MSMg01no498_j13.b1 CHROMAT_FILE:
MSMg01no498_j13.b1 PHD_FILE: MSMg01no498_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:42 2005
(652 letters)
>mm_chr16_75905655_75906705
Length = 1051
Score = 1214 bits (628), Expect = 0.0
Identities = 646/652 (99%), Gaps = 1/652 (0%)
Strand = Plus / Plus
Query: 1 caagtttcatttttaattggaaattaccaatgtaccagatggagttgagggacatactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtttcatttttaattggaaattaccaatgtaccagatggagttgagggacatactaa 260
Query: 61 acttgtaggaatgtattaaccttttagtatataccattacctattttataatatgtcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtaggaatgtattaaccttttagtatataccattacctattttataatatgtcttc 320
Query: 121 agatatttgagggtacccaatatggaagacctttggcttgtgactctcagtctttacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatatttgagggtacccaatatggaagacctttggcttgtgactctcagtctttacttt 380
Query: 181 taatctttaagaacatatttgagtgacattcttcttacatataaactacttggataaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatctttaagaacatatttgagtgacattcttcttacatataaactacttggataaaat 440
Query: 241 aatccttagcatattaaacaacagaaaagaaaaatacctcacaagtgataaaataagatg 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatccttagcaaaataaacaacagaaaagaaaaatacctcacaagtgataaaataagatg 500
Query: 301 tggtaaaactataatttgattttaaagtttaacttattagtaagtttattgataagtact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtaaaactataatttgattttaaagtttaacttattagtaagtttattgataagtact 560
Query: 361 atccacataagaaaataatacattatattgtatgtagtattctataaaatctattactga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccacataagaaaataatacattatattgtatgtagtattctataaaatctattactga 620
Query: 421 acattagaattataaatattttaatcatcacactatagaatcaattagaaaatacaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattagaattataaatattttaatcatcacactatagaatcaattagaaaatacaaata 680
Query: 481 ccaaagcctattgttgcaactttgtttttagctattatatatgaaggcaagaattgttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaagcctattgttgcaactttgtttttagctattatatatgaaggcaagaattgttca 740
Query: 541 gattgtatatatgtctggctgctatatgaattttaatacatgtgtaaagtctataaatgt 600
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 741 gattgtatatatgtctggctgccacatgaattttaatacatgtgtaaagtctataaatgt 800
Query: 601 ttaaaacaaatatgtctcttcccttctgaaacatttatcaagttatttcttt 652
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaat-aaatatgtctcttcccttctgaaacatttatcaagttatttcttt 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_j13.g1 MSMg01no498_j13.g1 CHROMAT_FILE:
MSMg01no498_j13.g1 PHD_FILE: MSMg01no498_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:42 2005
(671 letters)
>mm_chr16_75930680_75931751
Length = 1072
Score = 1212 bits (627), Expect = 0.0
Identities = 662/675 (98%), Gaps = 7/675 (1%)
Strand = Plus / Minus
Query: 1 actctaaaattccttatgaatattcagtgtacaatctttatgcatctcatggtttcctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 actctaaaattccttatgaatattcagtgtacaatctttatgcatctcatggtttcctgc 813
Query: 61 tattaaatacaaccatactgatgaataattgggttagaaatatgcccttattacagctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tattaaatacaaccatactgatgaataattgggttagaaatatgcccttattacagctaa 753
Query: 121 cctcagcccaacccaaagccaagcctgtatgtcacccagataaaggactctcagacaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cctcagcccaacccaaagccaagcctgtatgtcacccagataaaggactctcagacaatg 693
Query: 181 tataaaaatcctcaaaagcaagaacttacttattcttttgatcaaaagaaaaaaaaattg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 692 tataaaaatcctcaaaagcaagaacttacttattcttttgatcaaaag-aaaaaaaactg 634
Query: 241 gaatattcttattgtttttgat---aacaaaatattgagtattttaaattagtgacaaaa 297
|||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 633 gaatattcacattgttttcgataagaacaaaatattgagtattttaaattagtgacaaaa 574
Query: 298 tgaaaatattcatagaaaaacataaattggtaactttgataatagctattatttctatgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgaaaatattcatagaaaaacataaattggtaactttgataatagctattatttctatgt 514
Query: 358 cattccatgaagtttttaatgggtagatctgtccaagtcaagggatcagggaacactttt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattccatgaagtttttaatgggtagatctgtccaagtcaagggatcagggaacactttt 454
Query: 418 gtgatatggctagttgagttcaagtctaatgagttgaacttaattaacccaaaataaaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtgatatggctagttgagttcaagtctaatgagttgaacttaattaacccaaaataaaag 394
Query: 478 tgata-aaaatattgtaagaatggatggggactgaatctctcaggaaaaaaaggcaccag 536
||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 393 tgatagaaaa-atcgtaagaatggatggggactgaatctctcagg-aaaaaaggcaccag 336
Query: 537 gtaagactgaggaaggggacccacaggaccttgtaagttaccctgagttgtactgttcat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtaagactgaggaaggggacccacaggaccttgtaagttaccctgagttgtactgttcat 276
Query: 597 cttctaagaacaatggagacctagagaactggggagactgttttctgcttgctggcttct 656
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 cttctaagaacaatggagacctagaaaactggggagactgttttctgcttgctggcttct 216
Query: 657 ttctcatttgcttgg 671
|||||||||||||||
Sbjct: 215 ttctcatttgcttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
