BAC Information

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BAC

Clone NameMSMg01-498P06
Chromosome16 (Build37)
Map Location 4,223,985 - 4,224,489
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp
Downstream geneEG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498P06.T7 (MSMg01no498_p06.b1)MSMg01-498P06.TJ (MSMg01no498_p06.g1)
ACCAG575152AG575153
length759754
length of high quality
(start - end)
505 (79 - 583)128 (123 - 250)
definitionCHROMAT_FILE: MSMg01no498_p06.b1 PHD_FILE: MSMg01no498_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:12 2005CHROMAT_FILE: MSMg01no498_p06.g1 PHD_FILE: MSMg01no498_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAACCACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCATTCTCTTCCGTTTCACTAAAAACTGCACTTGGT
AAGGGCATCGGAGTCCACAGATTGCAATAGTTAAACATCTAATCGGTTGT
TTCTAATTTAATGCATGGGTACACTTGTAGATGCAGGTGCGTTGCACCTG
TGTACATGCCTGGAGAGTCCAGGGTCAATGTCAGAACCTCCTAAGTCATT
CTTCATCTTCCTCTTGAGGCAGGATCGCTCACTGCTCTGATTCAGCTCAC
TGACTCAGCTAGTCTGGCTGGCCAGGAAGCATCCACATATCCTCTTGGCT
TTGCCCCTCCAGAGTTTGGTTTACAAACGCCCCTGAGATGCACAGATATA
GCTTTTATGTGGATGCTGGGACTGAACTCAGGTCCTCCTGCTTGGGCCTT
CTTCACCTCAGCCTCTCAGCCGACCCATGATCAGCCTCCCACAGAATGAC
TGCTTTGTTCTTGAAGGCCTAGCTTTTCTCATCCCTCCAGCTCAGGCTCC
TCTGATGATGTTTCGTCTTCATTCTGAGCTCAGGATGCTGGGATGCTAGA
GGGTTCAGTCCTTTCCTTCCTGTATAGATTTCCTCCTCTCATTTCTTAGA
CAGAGACTCTGTCTTAACCATGTTCTATTGCTGTGAAGATACACCATGAT
CAAGGTATCTTTTATTTAAGAATTGTTTTTAATTGGCTAAGGATTACAGT
TCTCAAGTT
CCCCACTCATGACATGNGAGGCCGGGGGCGCCCGTTTCCAAACTGGGGGN
GAANNANANAATTTACAACACAGGGGAAACCACCNGCCNCTGCCTCGCAA
GGGCTGGGATTAAAGTTGTGCGCCACCACTGTCTGGCTAGTATTTTTATT
TTTAATTATGTGTGTGCCTGTGTGTCTTTGTGGGCATGTGTGTGTGAGTT
CAGTTGACAGTGGGATCCAGAAGTGTGTCAATTCCCTGGTACTGGAATTA
TTTGTTAGTTGTGAGTCACCAACATAGAGACTAGGAACCAAACTTCAGGT
TTTATTGGAGGCAGCTAGTTTTTATTTTTGCTGAGCCACCCCTCTACAGA
ACACTCCATTTTGATACCCAATTTGTATCATCTTAAGCATCTGGGGGCCC
CACAGCTTGGCTGCCCCGCCCCTTTTTATGCAACCCCAGTGGCTTATGGT
AGATTACTTCTCAGTAGCATTTTTAAGTAACCAAGATATTATAGGCATTG
AAATCTCATTAATTCAATTTTTCTGATATGTTTATACAGAAAGACAGCTA
AAGTTTACCCTCTCCTGTTTCGAATGGAATATTAATAGCATATTCATGTT
TACATGAAGAAATAAACCGCAGAGGAAAGCCTTTTACCCCTCTTAGTTAC
TGTGAAGCTTTTTTTTACATTCCTTGTACTGGCAATTACGAACCCCCACT
TACTCTTATCTTTTTAGAAACCTTCTCTCTAACGGTCTTGTTTAACCGAT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_p06.b1 MSMg01no498_p06.b1 CHROMAT_FILE:
MSMg01no498_p06.b1 PHD_FILE: MSMg01no498_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:12 2005
         (505 letters)



>mm_chr16_4223785_4224689
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactaaaaactgcacttggtaagggcatcggagtccacagattgcaatagttaaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcactaaaaactgcacttggtaagggcatcggagtccacagattgcaatagttaaacat 260

                                                                       
Query: 61  ctaatcggttgtttctaatttaatgcatgggtacacttgtagatgcaggtgcgttgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaatcggttgtttctaatttaatgcatgggtacacttgtagatgcaggtgcgttgcacc 320

                                                                       
Query: 121 tgtgtacatgcctggagagtccagggtcaatgtcagaacctcctaagtcattcttcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtacatgcctggagagtccagggtcaatgtcagaacctcctaagtcattcttcatct 380

                                                                       
Query: 181 tcctcttgaggcaggatcgctcactgctctgattcagctcactgactcagctagtctggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcttgaggcaggatcgctcactgctctgattcagctcactgactcagctagtctggc 440

                                                                       
Query: 241 tggccaggaagcatccacatatcctcttggctttgcccctccagagtttggtttacaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggccaggaagcatccacatatcctcttggctttgcccctccagagtttggtttacaaac 500

                                                                       
Query: 301 gcccctgagatgcacagatatagcttttatgtggatgctgggactgaactcaggtcctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccctgagatgcacagatatagcttttatgtggatgctgggactgaactcaggtcctcc 560

                                                                       
Query: 361 tgcttgggccttcttcacctcagcctctcagccgacccatgatcagcctcccacagaatg 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tgcttgggccttcttcacctcagcctctcagccgacccatgagcagcctcccacagaatg 620

                                                                       
Query: 421 actgctttgttcttgaaggcctagcttttctcatccctccagctcaggctcctctgatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgctttgttcttgaaggcctagcttttctcatccctccagctcaggctcctctgatga 680

                                    
Query: 481 tgtttcgtcttcattctgagctcag 505
           |||||||||||||||||||||||||
Sbjct: 681 tgtttcgtcttcattctgagctcag 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)