BAC Information

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BAC

Clone NameMSMg01-499N04
Chromosome16 (Build37)
Map Location 10,911,685 - 10,912,187
singlet/doubletsinglet
Overlap genenone
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499N04.T7 (MSMg01no499_n04.b1)MSMg01-499N04.TJ (MSMg01no499_n04.g1)
ACCAG575813AG575814
length799732
length of high quality
(start - end)
---503 (77 - 579)
definitionCHROMAT_FILE: MSMg01no499_n04.b1 PHD_FILE: MSMg01no499_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:18 2005CHROMAT_FILE: MSMg01no499_n04.g1 PHD_FILE: MSMg01no499_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTCCCCCCANNCACCCCCCAATGGCATGTGGGAAGCCGCGCCGTGCAT
CAGGCGGGCGGGAGGGGGAGGGGGGGGAGAGGAAAGAGGAGAGCTNTCTA
CCCCTNTTNCTTANATTTAAANCCNAATAACTTTNCTNNNTNTTNNCCTT
CTTNANNNANCTNCNNCCACTCCNTNNNNACCTTCCCTCTANNNCCNNNA
CCCCNNANANNAANCCCTTTTTTNNCNNNATTTTTCCNNNNTTCTTTNNN
AACCNCCCNNNNNCCCNACCCCCCNAACCCCCNCCCTTAAATCCNCTTTC
TATTCAACTAACTACTCCCCAACTTNNNNNTTTTTTTCCCCCCCCCCNCN
CTNNNNNNNNTTTCCCCCCCCCCCTCTTTCTTCTCTCCCCCTCTTTCCCC
TTTTTTTNNNCCCCTCCCCCCCCCCCCCCCCCTTNCCNCCCCCCTCCCCC
CCCNCNCNCTCCTCCCNCNCAAAAACCCCCCCCCCCCCCCNNTTTCTCTC
CCAANNCCCCCNCTTTTCCCAATTTTTTTTTCTTCTCTCCCCCCCCCCCC
CCCCCCCCCCCNNCTTCCCCCCCNTCCCTCCCCCCCCCCCNCCCCCCTCC
CTCCCTTCNCCCNCCCCCCCCCCCTTTCNCCCCCNCCNCTTCTTTTTTTC
TCCCCCCTCCCTCCCTTCCCCCCCCCCCNNTNCNNTTCCTCTCCTCCCCC
ACCCCCCTCCTTCCCTCCCNTCNCCCCCTCCCCCCCTTCCCCTTCCCCCC
CCNCNCCCTCCTCCCCCTCCCTTTTCTTCCAAAAATAAAAAATATTATG
TCTGGCGGCCGCCGGGCCTTCCCCATTGGGNGACACNANANAAGGAATGC
TGACATCGGGGGCATGGNTGGNAGNAGCAAGCAAAAGAAGGTAGGGTTTG
ACTCAAAAGCAGTTAGAACCTAAGACAGGTCTGAGAACACGGGCTCCCAC
AGAGCCTCACCAGCCCAGCCCCACTCACACCTTCAGAACTAATGGGAGAT
ACACTGTGTTAAGACACCCAGGTCTGGGAGCTTCAGTCTGTTCTTAAGGA
AACCTGGCAGTGGCCTGTTTAACTTGTTTATCTTTCTCTGAATTTGTGAA
ATATTANTTCNTTTTTAAAGATTTATTATTTGCTTAGGTGTGCATACCTA
TTATGTGTATATGCACACACATGCAGGTTCCCATAGAAGCCAAAAGAAGG
TGCCGGGTTTCCCGAAACTGGAGTCGCTGCCAGTTGTGAGTTACTGGATG
TGGGTGCTGGTCCTCTGCAAGAGCAGCAAGCACTCTGAACTGCTGAGCCA
TCTACTGACCCAAAACTTTTTATTATTGACTCCATACATCTTTAACATCA
GTACTGGGGCAGGGCTGGGGAGCTTTGTTAGACCAGGACACCAGCTGGGG
CAGGGAGATCTGGGCTGGGGTAGGGGTGATGCAGCTGTACCTATATTATT
GAGCAACCTTGCTCTAACAGACATCCCTGTTGCCGAGTATCATATCCAGG
TGGCCCCTCCGTGCACTTCGAGAACCTCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_n04.g1 MSMg01no499_n04.g1 CHROMAT_FILE:
MSMg01no499_n04.g1 PHD_FILE: MSMg01no499_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:18 2005
         (503 letters)



>mm_chr16_10911485_10912387
          Length = 903

 Score =  917 bits (474), Expect = 0.0
 Identities = 496/505 (98%), Gaps = 4/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagcaaaagaaggtagggtttgactcaaaagcagttagaacctaagacaggtctgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaagcaaaagaaggtagggtttgactcaaaagcagttagaacctaagacaggtctgaga 260

                                                                       
Query: 61  acacgggctcccacagagcctcaccagcccagccccactcacaccttcagaactaatggg 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 acacgggctcccacagagcctcaccagcccaaccccactcacaccttcagaactaatggg 320

                                                                       
Query: 121 agatacactgtgttaagacacccaggtctgggagcttcagtctgttcttaaggaaacctg 180
           |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 321 agatacactgtgttaagacacccaggtctgggagcttcagcctgtacttaaggaaacctg 380

                                                                       
Query: 181 gcagtggcctgtttaacttgtttatctttctctgaatttgtgaaatattant--tcnttt 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||  ||
Sbjct: 381 gcagtggcctgtttaacttgtttatctttctctgaatttgtgaaatattattattc--tt 438

                                                                       
Query: 239 ttaaagatttattatttgcttaggtgtgcatacctattatgtgtatatgcacacacatgc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttaaagatttattatttgcttaggtgtgcatacctattatgtgtatatgcacacacatgc 498

                                                                       
Query: 299 aggttcccatagaagccaaaagaaggtgccgggtttcccgaaactggagtcgctgccagt 358
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 aggttcccatagaagccaaaagaaggtgtcgggtttcccgaaactggagtcgctgccagt 558

                                                                       
Query: 359 tgtgagttactggatgtgggtgctggtcctctgcaagagcagcaagcactctgaactgct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtgagttactggatgtgggtgctggtcctctgcaagagcagcaagcactctgaactgct 618

                                                                       
Query: 419 gagccatctactgacccaaaactttttattattgactccatacatctttaacatcagtac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gagccatctactgacccaaaactttttattattgactccatacatctttaacatcagtac 678

                                    
Query: 479 tggggcagggctggggagctttgtt 503
           |||||||||||||||||||||||||
Sbjct: 679 tggggcagggctggggagctttgtt 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)