Query= MSMg01no501_i14.b1 MSMg01no501_i14.b1 CHROMAT_FILE:
MSMg01no501_i14.b1 PHD_FILE: MSMg01no501_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
(612 letters)
>mm_chr16_52107718_52108730
Length = 1013
Score = 1123 bits (581), Expect = 0.0
Identities = 605/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Minus
Query: 1 aacgacactgacttatgaaggttatagttcatgttaagatagtgaattatgtatctatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aacgacactgacttatgaaggttatagttcatgttaagatagtgaattatgtatctatta 754
Query: 61 tcttataaatttaatgtcacaataaagactgtgacatatctgtacttttctatgaagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tcttataaatttaatgtcacaataaagactgtgacatatctgtacttttctatgaagtac 694
Query: 121 atgctttatataattctctaacaaactctgtattctagacacactgcttttaacaacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atgctttatataattctctaacaaactctgtattctagacacactgcttttaacaacact 634
Query: 181 caaccttcaaaatacaaaattgcattatttctcaccgtttaagtacaaaggaagacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caaccttcaaaatacaaaattgcattatttctcaccgtttaagtacaaaggaagacagaa 574
Query: 241 agcctcacatatcacgttgtctgcagctggggtacttgttcctatcatacaatcattcca 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agcctcacagaacacgttgtctgcagctggggtacttgttcctatcatacaatcattcca 514
Query: 301 cagtgagacagcccttctgaaagccgtctgacttgccaccatatgataggaaatgatgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cagtgagacagcccttctgaaagccgtctgacttgccaccatatgataggaaatgatgac 454
Query: 361 taattaacaaggactttcatgattactaattactagtttgtatcactaaaagtctccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taattaacaaggactttcatgattactaattactagtttgtatcactaaaagtctccttc 394
Query: 421 caaccacaacc-aaaaaaaaaaaaaattctgctaaccaagactcaacaatcttataacta 479
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 393 caaccacaaccaaaaaaaaaaaaaaattgtgctaaccaagactcaacaatcttataacta 334
Query: 480 taattctttctcatgtcaaggccatcaccgatgctgccccgacactcttctgttttagct 539
|||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 taattcatccacatgtcaaggccatcaccgatgatgccccgacactcttctgttttagct 274
Query: 540 tcagtttataaccctgtatcttctgtcaatggtgtgaatcaatttctttgacaatcaagc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcagtttataaccctgtatcttctgtcaatggtgtgaatcaatttctttgacaatcaagc 214
Query: 600 aaggttgtggaat 612
|||||||||||||
Sbjct: 213 aaggttgtggaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_i14.g1 MSMg01no501_i14.g1 CHROMAT_FILE:
MSMg01no501_i14.g1 PHD_FILE: MSMg01no501_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:23 2005
(634 letters)
>mm_chr16_51953388_51954423
Length = 1036
Score = 965 bits (499), Expect = 0.0
Identities = 596/647 (92%), Gaps = 34/647 (5%)
Strand = Plus / Plus
Query: 4 aaaaattcagttctgtccatatcaggttacccaatcatactttgtataatctgttttcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aaaaattcagttctgtccatatcaggttacccaatcatactttgtataatctgttttcct 248
Query: 64 gaagaacaaagaaggtcttggagttatctttttaaaaatattctcataaatatgtttgta 123
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 gaagaacaaagaaggtcttgga----tctttttaaaaatattctcataaatatgtttgta 304
Query: 124 catacttggtcatcaaaggtgatggtatttgggtcaacatggacttcatcctaacttctt 183
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 305 catacttggtcgtcaaaggtgatggtatttaggtcaacatggacttcatcctaacttctt 364
Query: 184 catcattgctatttgggcaacaagaaatgctgcatatctgagtgcaggggagaagagaaa 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 catcattgctatttgggcaacaagaaatgctgcatgtctgagtgcaggggagaagagaaa 424
Query: 244 aggaagaaattgtactggcagaggtgaatgtgtacatacatgccaatgtca--------- 294
|||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 425 aggaagaaattgtactagcagaggtgaatgtgtacatgcatgccaatgtcacgatgatgt 484
Query: 295 ----------ataaactgaatatgactgaataagaaatattaaagaatctttgtgagaag 344
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 485 cctgtgaatcataaactgaatatgactgaataagaaataataaagaatctttgtgagaag 544
Query: 345 aaatagagaatgaatggtttaaccttctgtctgcttctgtaaagaaaagagctattggat 404
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaatagggaatgaatggttcaaccttctgtctgcttctgtaaagaaaagagctattggat 604
Query: 405 accagcactaactatgcattttttagaatgtttgtctaattctagaatgtt--taat--- 459
||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct: 605 accagcactaactatgcattttttagaatgt----ctaattctagaatgttggtgatact 660
Query: 460 -gtctcacattaaaaggactataaaaccactattcaactgtaggagatgagtgtactctt 518
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 661 tgcctcacattaaaaggactataaaaccacgattcaactgtaggagatgagtgtactctt 720
Query: 519 tgatttttctcacccctacttttttttaattaggtattttcttcgtttacatttccaatg 578
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 721 tgatttttctcacccctacttttttttaattaggtattttcttcatttacatttccaatg 780
Query: 579 ctatgccgaaagtcccccat-accctcccagccactcccctacccac 624
|||| || |||||||||| | || ||||||||||||||||||||||
Sbjct: 781 ctatcccaaaagtccccccttacgttcccagccactcccctacccac 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1036
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1026
Effective search space: 640224
Effective search space used: 640224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
