BAC Information

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BAC

Clone NameMSMg01-501N10
Chromosome16 (Build37)
Map Location 42,139,348 - 42,139,669
singlet/doubletsinglet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43, BC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501N10.T7 (MSMg01no501_n10.b1)MSMg01-501N10.TJ (MSMg01no501_n10.g1)
ACCAG577338AG577339
length725752
length of high quality
(start - end)
616 (63 - 678)321 (326 - 646)
definitionCHROMAT_FILE: MSMg01no501_n10.b1 PHD_FILE: MSMg01no501_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:44 2005CHROMAT_FILE: MSMg01no501_n10.g1 PHD_FILE: MSMg01no501_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXATCAGAGAGGATGCGCGGAATTCAAGAG
ATTGCTAAAAAGCTATTTTGTTGTTCATTTTATGCTCCTCCCTCTTTTGA
AATTTTCCCTGAGCCTTTGAAGAGATGATGTAAAATATCTTGCTCAAGAA
TTCAACCATTACTTATTCTCAGTACTTTGTTCAGCCATGAGTCTCTACAT
TCACTGCTCTTCATTGGAAAGAAAAAAAAATTCTCTAATTAAGGTTGAGA
AAGTAGTATTTGTCTATGTATTTAAACATAAATATTTAAAAGGCAAATTC
ATCCTATGTCTTTTTATCTAAACGATAATTTTCATTCCCTATCTAGGGTT
TATGAGGTCCCCTGGCATGTGATTCTGACCATGTTTTGTGTCTGATGCAC
ATGGTGTCTTTAATAGGGATTTACCTTCAACCTCTGGGAGGCAACCAAAA
AGAGGGAATCTCTTGGACTACAGTGACTAATAATTCGAAAGGGGACTTCT
CATGTGTGGTATTGAGGTTTTGTTAGATAGTTTTTTGGCTCTTGGAGAAA
AACTATCTGCCAAGATGGGAAATTTCCATTTAGAAGTATATGTGAATATA
CATACACATTGACATATGTGTTACATGTACTTTTAGGTAAATATATGAGT
CCTTATGCCTTTTTCAGATATCTTTACTTTTATTGTACATTCCTCCTTTT
TTTCTGTCTTGACCTCTCTCTTTAN
CATTATAGTGNGTTGCCTGGNGGCCGCCTGTTTCAAAAATGGAGGTGACA
CTATAGAAGTTTCAAAAAAATGCTGTGTAGCTAAGGCTAAGAAAGAGTCT
TATGGAATATACTGTAGCAAGACTTGTAGAGTTAAAATAATACATGTGCC
TGCTCAAAATATGGTTTATATAAACAATGTGGTTCCTACAAATGCTGCAC
AGAGAGATTCAATTTCATTCTTTACACAATGTTGGAAGAGAGCTTACATA
ATATTGTCAAATGATTCCTCCATTGTTTTTAACTTCAAAATTCCAGGTTC
TGAAAACATTAATCAGAGTNNTTTTATTCTTACATCACTGATAACAAAAT
TCTTTCCACCATAATGGTGATAATAAGGATAAGAGTGGCTTAGGCAAAAA
CTCACATTCATTTAATCTTCCTAATATTGGGAAAGATAGCAAAAAATCAT
AAAATTTGAATAAAGGATATGATTTACAACACTATAGACACCTATTAGCA
CCTATTAGATAAGGATGTTAGACATCCTCATCTGTCCAAATTACAGCCCT
AAGAGCAATGCATTAGTAGTGTTATTTGGAGAACAAGAAGGAAAATTTGC
AGGGGATTAGTAACTTGTTCAAAAACATTTGAGCCGTGTTCGCTGAAGAA
TGGATTTAGATCCGTGCTGATCACGTTCGGAACCTCTCTGAGCTGCTTTG
TTTGTTTGAATAAGTTCTTTCATTTTATTTTTAAGATTTATTTTATTTTA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_n10.g1 MSMg01no501_n10.g1 CHROMAT_FILE:
MSMg01no501_n10.g1 PHD_FILE: MSMg01no501_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:44 2005
         (321 letters)



>mm_chr16_42139148_42139869
          Length = 722

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttacatcactgataacaaaattctttccaccataatggtgataataaggataagag 60
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 522 attcttacatcactgataacaaaattctttccaccagaatgatgataataaggataagag 463

                                                                       
Query: 61  tggcttaggcaaaaactcacattcatttaatcttcctaatattgggaaagatagc-aaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 462 tggcttaggcaaaaactcacattcatttaatcttcctaatattgggaaagatagcaaaaa 403

                                                                       
Query: 120 aatcataaaatttgaataaaggatatgatttacaacactatagacacctattagcaccta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatcataaaatttgaataaaggatatgatttacaacactatagacacctattagcaccta 343

                                                                       
Query: 180 ttagataaggatgttagacatcctcatctgtccaaattacagccctaagagcaatgcatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttagataaggatgttagacatcctcatctgtccaaattacagccctaagagcaatgcatt 283

                                                                       
Query: 240 agtagtgttatttggagaacaagaaggaaaatttgcaggggattagtaacttgttcaaaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 282 agtagtgttatttggagaacaagaaggaaaatttgcaggggattagtaacttgttctaaa 223

                                 
Query: 300 acatttgagccgtgttcgctga 321
           |||||||||||||||| |||||
Sbjct: 222 acatttgagccgtgtttgctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)