BAC Information

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BAC

Clone NameMSMg01-502H11
Chromosome16 (Build37)
Map Location 55,209,186 - 55,209,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502H11.T7 (MSMg01no502_h11.b1)MSMg01-502H11.TJ (MSMg01no502_h11.g1)
ACCAG577814AG577815
length720749
length of high quality
(start - end)
566 (67 - 632)602 (73 - 674)
definitionCHROMAT_FILE: MSMg01no502_h11.b1 PHD_FILE: MSMg01no502_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:30 2005CHROMAT_FILE: MSMg01no502_h11.g1 PHD_FILE: MSMg01no502_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGATTCACAATTCAGAGACGAGTCGCGGAATTCAAGGC
TTATCCAAAAACATGATAAAAGCAATATGCAGCAAACCAGTAGCTAATAT
AAAACTAAATGGAGAGAAACTTAGAGCAATCCCTCTAAAATCAGGGACTA
GACAAGGCTGCCCACTCTCTCCCTACCTATTCAATATGGTACTTGAAGTC
CTATCCAGAGCAGTTAGACAACAAAAGGAAATCAAAGGTTATTCAAATTA
AAAAGGAAGAAGTCAAAATATCACTACTTGAAGATGATATTTTAGTATAC
ATAATTGACTCCATTTATTCCACCAGAACTTCTAAACCTGACAAAAAATT
ACAGTGCAGTAGCTGGATATAATATTAACTCAAACAAATCAGTGACCTTT
TTCTACACAAAAGATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACC
CTTTACAATAGTCACAAATAATATAAAATACCTTTGTGTGACTCTAACAA
AGCAAGAGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGGAAGAA
ATCCAGAAGATCTCAGAAGATGGAAAGATCTCCCATGTTCATGGATTGGC
AGGATTAATATAGTAAAAATGGCTATCTTGCCAAAACCTATTTTTAGATT
CAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCACAAAGTTAGAAA
TGGTAATTTGCAAATTCATT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAACCCTTTTGTAGCAAATTCATTTT
TCTGCTTAACCAAAGAGACAATATGCTTTAAACAGATATCTCCTCTGTTA
GTGCTTCCCTGGGAGGGAAACAATTTTATCAGCCTTTCCTTTATTCCATT
TGTTAACTCTTAGACAGAAAAATGATTTAAATAAAGTGACATCCATGTAA
GGGTTAGACAGAGGAAAGAGAGAAATGCAACATGGAGGTGTTCTTGTTAT
AAGACAAACATCTTTATTGTTTCTTTAAGGTTTGTGCTTATGTGGCCTTT
CCATTTGAATTAGCCCTCAAAAATTTGGCTGAAGTCCCTTCAGTCTTTAT
TTCCTTAGAGCTATTCTAATTACATCCTTTCTTGAAACTGTTATTCTATA
ACCAAATGCAGGGATAATGATGAGGTAAAGAAAAAGAATCTTCAGTAGTT
AAGCTGAGATCTCAGTAAAGATGGACATGATAAGAGCCTGTTGGCCAGAT
GCAGATGCACATGTATTTCCACACAAAAGTGCAGTGTGAAGAAGGGGACA
AAGGAGACCCTCATTCTCAGCCTGCTACCAGGCCATTTGGACACATCATT
AATTACTTCATGCCACTACTTGGTGCACAGTGACCTTCTAAGTGGTCCCA
ATGGGCTGAGCATTAACCCACGGCAGTCTATGCAGCAAAGTTAAAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_h11.g1 MSMg01no502_h11.g1 CHROMAT_FILE:
MSMg01no502_h11.g1 PHD_FILE: MSMg01no502_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:31 2005
         (602 letters)



>mm_chr16_55208986_55209987
          Length = 1002

 Score = 1118 bits (578), Expect = 0.0
 Identities = 596/602 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataacccttttgtagcaaattcatttttctgcttaaccaaagagacaatatgctttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cataacccttttgtagcaaattcatttttctgcttaaccaaagagacaatatgctttaaa 743

                                                                       
Query: 61  cagatatctcctctgttagtgcttccctgggagggaaacaattttatcagcctttccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cagatatctcctctgttagtgcttccctgggagggaaacaattttatcagcctttccttt 683

                                                                       
Query: 121 attccatttgttaactcttagacagaaaaatgatttaaataaagtgacatccatgtaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attccatttgttaactcttagacagaaaaatgatttaaataaagtgacatccatgtaagg 623

                                                                       
Query: 181 gttagacagaggaaagagagaaatgcaacatggaggtgttcttgttataagacaaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttagacagaggaaagagagaaatgcaacatggaggtgttcttgttataagacaaacatc 563

                                                                       
Query: 241 tttattgtttctttaaggtttgtgcttatgtggcctttccatttgaattagccctcaaaa 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcattgtttctttaaggtttgtgcttatgtggcctttccatttgaattagccctcaaaa 503

                                                                       
Query: 301 atttggctgaagtcccttcagtctttatttccttagagctattctaattacatcctttct 360
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 atttgcctgaagtcccttcagtcttcatttccttagagctattctaattacatcctttct 443

                                                                       
Query: 361 tgaaactgttattctataaccaaatgcagggataatgatgaggtaaagaaaaagaatctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaaactgttattctataaccaaatgcagggataatgatgaggtaaagaaaaagaatctt 383

                                                                       
Query: 421 cagtagttaagctgagatctcagtaaagatggacatgataagagcctgttggccagatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtagttaagctgagatctcagtaaagatggacatgataagagcctgttggccagatgc 323

                                                                       
Query: 481 agatgcacatgtatttccacacaaaagtgcagtgtgaagaaggggacaaaggagaccctc 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatgcacatgtatatccacacaaaagtgcagtgtgaagaaggggacaaaggagaccctc 263

                                                                       
Query: 541 attctcagcctgctaccaggccatttggacacatcattaattacttcatgccactacttg 600
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 262 attcttagcctgctaccaggccatttggacacatcattaattacttcatgccaccacttg 203

             
Query: 601 gt 602
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)