Query= MSMg01no502_n11.b1 MSMg01no502_n11.b1 CHROMAT_FILE:
MSMg01no502_n11.b1 PHD_FILE: MSMg01no502_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:58 2005
(322 letters)
>mm_chr16_44647756_44648479
Length = 724
Score = 522 bits (270), Expect = e-152
Identities = 302/320 (94%), Gaps = 14/320 (4%)
Strand = Plus / Minus
Query: 5 taccacctgcaagagttgcatcaacatgt--aataaaaaaaataatggagtaggagctat 62
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 338 taccacctgcaagagttgcatcaacatgtaaaaaaaaaaaaaaaatggagtaggagctat 279
Query: 63 aggtgtaagaaagactggagagtgaattatgtgagggatggaacaacagagaggccacag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggtgtaagaaagactggagagtgaattatgtgagggatggaacaacagagaggccacag 219
Query: 123 atgaaataactgaggagagagagagagagagagagagagagagagagagagagagagaga 182
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atgaaataactgag------gagagagagagagagagagagagagagagagagagagaga 165
Query: 183 gagagagagagagactactatgttcatttggaaacccaaacacttcactttgattaatat 242
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 164 gagagagagagagactactatgttcatttggaaacc------cttcactttgattaatat 111
Query: 243 ttttaaaaatcaatactctggattataggatcagaggtgttgtatccacaacagctgccc 302
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 110 ttttaaaaatcaatactctggattataggatcagaggtgttgtgtccacaacagctgctc 51
Query: 303 caacactggaagtaactggg 322
||||||||||||||||||||
Sbjct: 50 caacactggaagtaactggg 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 724
Length adjustment: 9
Effective length of query: 313
Effective length of database: 715
Effective search space: 223795
Effective search space used: 223795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_n11.g1 MSMg01no502_n11.g1 CHROMAT_FILE:
MSMg01no502_n11.g1 PHD_FILE: MSMg01no502_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:58 2005
(653 letters)
>mm_chr16_44503686_44504738
Length = 1053
Score = 1139 bits (589), Expect = 0.0
Identities = 637/657 (96%), Gaps = 8/657 (1%)
Strand = Plus / Plus
Query: 1 agcattcactccaggccctaagagactctggaggtatgtacaggtttataaggattgttt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcattcactccagaccctaagagactctggaggtatgtacaggtttataaggattgttt 260
Query: 61 gcacacagccctcatcaccggatgtagttcaacttgaggtgtatagaaatttaagtttgg 120
|| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 261 gcgcagagccctcatcaccggatgttgttcaacttgaggtgtatagaaatgtaagtttgg 320
Query: 121 ggagacagagaaccctgctagaaggtggccagaacagtttcttctgtgacactgagccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagacagagaaccctgctagaaggtggccagaacagtttcttctgtgacactgagccct 380
Query: 181 aacagtgagctggtcctacacagctatcctagatatgtgtcatagtcagggcacaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacagtgagctggtcctacacagctatcctagatatgtgtcatagtcagggcacaaaggt 440
Query: 241 tttt----gtacagccgtcagaaggttctataaacgggggctaaagagaaagacaaaaag 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ----ccaggcacagccgtcagaaggttctataaacgggggctaaagagaaagacaaaaag 496
Query: 297 aaacgctcatgttttcatccagttccatcaagaagagcctcccaggttcttctcatacat 356
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatgctaatgtttttatccagttccatcaagaagagcctcccaggttcttctcatacat 556
Query: 357 tcgaagaaggagaaaagtgactcagtttccaaccttgattatagccaagatgccactacc 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 557 tcgaagaaggagaaaagtgactcagtttccaaccttgattatagcaaagatgctactacc 616
Query: 417 cagaatctactgtctctaatgactactcctctcttggggatgataggtgggactctgtgg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagaatctactgtctctaatgactactcctctcttggggatgataggtgggactctgtgg 676
Query: 477 atgccaagtctggcatgtccatgtaagagacagtatgacatggtttcctgcccttgaaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgccaagtctggcatgtccatgtaagagacagtatgacatggtttcctgcccttgaaac 736
Query: 537 agagtcagcaagggatgagcctccatgagtgtcgatggttgttgttaaggcttgtttgta 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 737 agagtcagcaagggatgagcctccatgagtgttgatggttgttgttaaggcttgtttgta 796
Query: 597 taacagtctacatattttcaagttcctcctctgaggaatgtcccttctgccaaggtt 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taacagtctacatattttcaagttcctcctctgaggaatgtcccttctgccaaggtt 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
