BAC Information

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BAC

Clone NameMSMg01-502P05
Chromosome16 (Build37)
Map Location 31,990,516 - 31,990,749
singlet/doubletsinglet
Overlap geneSenp5
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P05.T7 (MSMg01no502_p05.b1)MSMg01-502P05.TJ (MSMg01no502_p05.g1)
ACCAG578182AG578183
length727771
length of high quality
(start - end)
234 (73 - 306)100 (136 - 235)
definitionCHROMAT_FILE: MSMg01no502_p05.b1 PHD_FILE: MSMg01no502_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005CHROMAT_FILE: MSMg01no502_p05.g1 PHD_FILE: MSMg01no502_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTANACGACTCACTAAATCAAAACTACCGCNGGAATCCNTTCT
TTCTAAAATAATCGTCTGNNNTTTCATTTTTCTGATGCATAATGAGAACT
GGATGTACCTATAAAACAAAATGTAAAGAAAATTTAAATTTCAATGTAAG
TATAATGTCATAAAGACATATAGCAATTAAGATCAAAATGAAAGAGAATA
TGTGTACTTCAATTTACTCTGTCAGCTCTAAGGAAATCCTTTCTGACTGA
GGTTCCCACTGCAAGATCTGAGAAGAAGGAAGGCATGAACATTTAATACA
GCCCCATTTTCNCTATACCTGGTTCTGGTGGAGATATTTCTAGAACCATT
TCTGGCAAGATGTAGTCACACATGCCTTTTTTTTTTTTTAATAAAAAAAT
TGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCTCAATTTTT
TTTTTTGCAATTACAGAGTGGTATTCAGTTAACAGAACAACAATTATCTT
CGTATACGCTGCATCAGAGACAACTGAAGATGAAAAAAATAAAACCCAAA
AATAAAACCAAAAGAAAAAAAAAACCAACAAATTACTATCCCCATATATA
ACTAATTTGTGCTGTGCACCAACAAGAACCCGCTTTAAATTTCCATGCCA
ATTTACAACCCCCAGACTGTACCAGGCAAGGGTAATGGCTATTGAAAATA
ACACCAGGACAGGGCTATCTAAAAGAT
NCCCATTGAANGNGTAGGCAGGNGNNNTCCCGCATCCGTATCCGTNNGAN
NNNNNNNGGTATCGTTATCTGCCNGNNNNNNNNAGGNGNNNNGNTTTTCT
NNGGAGNAAGTTTTTTACCGCCATATATCATGATGGCTAATTGAACTACA
GCACTGGTTTCCCTGGGGGCGGTGCGGGGAGAGTTGGTTCTAGGGCATCC
AAAGAGTTAGAAGCGATATCATTTTACTCCCAGGGGACTGAAAGTTTTTT
TCTCCCACCGGGCACGCCAGGAGGAAGCTCCTCACACCAGCGAAGCCAAA
CAACCCAAAATTTTTGGTGGTATACAGGGAACCACCGCGGAGACNAGGAA
GGATTTTTTTTTCCCCCCGCAGACAAGGCGGGACTGGAACTCACAGCTCC
TTCTGCTTCGCCCCCACTATTTTTTTGATTTAGTATACGCCACCACACCT
GGTGACTGATCAAACTAATTTTAATTTCCACCACCCCTGCCGAAGGACAC
ACTTTAATCCCCTTTTCCATATCCTTTCTATTGGCGTTCTTCTTCCAATC
ACTCGCCGTATTTACTTCGTCCTTTTTCCCGTACCTCGGTCCTTCGTTCC
CCTTCTTTCTCTTGGGTCTATGATCCCCCACTACCCATCAAAAATAACAG
GACCAATTTTTTTTTTTTTTTTTATTCANGGGCAAAGGACGAGCGCCTTC
ATAACTCACCCCCATAATATCCCTTATGGACACATCCTAACAACGCAGCA
CATGTACACACCGTCACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p05.b1 MSMg01no502_p05.b1 CHROMAT_FILE:
MSMg01no502_p05.b1 PHD_FILE: MSMg01no502_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:06 2005
         (234 letters)



>mm_chr16_31990316_31990949
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttttctgatgcataatgagaactggatgtacctataaaacaaaatgtaaagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatttttctgatgcataatgagaactggatgtacctataaaacaaaatgtaaagaaaa 260

                                                                       
Query: 61  tttaaatttcaatgtaagtataatgtcataaagacatatagcaattaagatcaaaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tttaaatttcaatgtaagtataatgtcataaagacatatagcagttaagatcaaaatgaa 320

                                                                       
Query: 121 agagaatatgtgtacttcaatttactctgtcagctctaaggaaatcctttctgactgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 321 agagaatatgtgtacttcaatttactctgtcagctctaaggaaatcctacctgactgagg 380

                                                                 
Query: 181 ttcccactgcaagatctgagaagaaggaaggcatgaacatttaatacagcccca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccactgcaagatctgagaagaaggaaggcatgaacatttaatacagcccca 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)