BAC Information

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BAC

Clone NameMSMg01-503B03
Chromosome16 (Build37)
Map Location 30,435,696 - 30,435,797
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3
Downstream geneTmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503B03.T7 (MSMg01no503_b03.b1)MSMg01-503B03.TJ (MSMg01no503_b03.g1)
ACCAG578274AG578275
length996723
length of high quality
(start - end)
---563 (88 - 650)
definitionCHROMAT_FILE: MSMg01no503_b03.b1 PHD_FILE: MSMg01no503_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:15 2005CHROMAT_FILE: MSMg01no503_b03.g1 PHD_FILE: MSMg01no503_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTTCCCAAAAGCCCAAAAACACAACCTTCATTATTTACACCCATAC
CCTTTTTATCTCTCCACCACCACCTCCCCACTCTACACCCTACCCACTTT
AATACCCCCATTATATTACATATCCATACTATTTTACTACTGACCACCCT
CTAACTTACTTCACACGTATTTATCCTTTATTCTTACCACCCTTTTACTC
ATTCTTCCCACAGTACTCCTTAATTGTTACCATCCAATCACCCATTATTG
TCTTTTACACGGTTCCGACCCCTCATATCAAATTTCATACCCTCTATTTC
CAAACACTGATCCTACAATCCACGTTTTAGCAGACCATCTTCGCATACAA
CCCGCCTTTTTCCCTTATAGTTCAACAATCACAACTTTAATTCAACAACA
TTAAAATTCAAAACCACCCCATTACACTAACATTTTATATATAAAATCTT
TTTCATACCCATTTTACTAAAATCCATATTAATTAATTTTATCCCCTTCA
ATCATTTAATATTACCACCTTTACTTTCAAACTTTCCCCATACCCCCACC
TATAATTTCTATTCACCTATTTTACCCCTCTCTCACCCCATATACCCTTT
TTAATAAACTATAAATTTCCTCATATATTTAACTAATACAGACAAATTAT
TAATAACAAAATCAAACACCACACATACCCTCACGTTCTCCCCTTATATA
AATTGCACCCTATCCCCCATATCCCCTTTATTATAAAACGATAATCAACG
ATTCCCATTACAACACATTACTACAACCATTTAAACCTAACACACCTCCC
CTTACATCATCCATCACATATTAACGACCTCCCTCGCCCCCTATATTACT
CACTATCAAATTATATCTCATACACACCCCACACTTATAATTTCTTTTAT
CTATATTCGCCACACAACTTTCAACCTCACTATAACAAACATATTCCACC
TCCTCCCTCTTACTTCAATCATATCAATCTCTCCTCTATCTATTAG
NNTTTTTTTTTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACGGGGCTCA
GATTCCTTATCTCCCTTCTCCTAAAGCAGCACTTGGAGGTTTTAAATCAG
GGTGCGATTGACTCCAAACACCATCCCATACCTTCTATCTGTGAGGAGCC
GCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTGTGTTCTAAGTG
GTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCGCCATGTGTTCT
GCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAGCCAATCAGGGAG
TAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTG
CCATTCTTACTCTTGATTTCTTGTTCTTGTTCTTTTTCTTGCTTTCTTGC
TCTCTCTTGCTCTTGCTCTCTTGCACTCTTGCACTCTTGCACTCTTGCAC
TCTTGCACTCTTGCACTCTTGCACTCTTGCACTCTTGCACTCTTGCACTC
TTGCACTCTTGCACTCTTGCACTCTTGCACTCTTGCACTCTTGCTCTTGC
TCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCA
GAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGAGAACGCGTGT
AAGAGCAATGGGCTCTCTGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_b03.g1 MSMg01no503_b03.g1 CHROMAT_FILE:
MSMg01no503_b03.g1 PHD_FILE: MSMg01no503_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:15 2005
         (563 letters)



>mm_chr16_30435496_30436458
          Length = 963

 Score =  197 bits (102), Expect = 1e-54
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacggggctcagattccttatctcccttctcctaaagcagcacttggaggttttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacggggctcagattccttatctcccttctcctaaagcagcacttggaggttttaaat 260

                                                     
Query: 61  cagggtgcgattgactccaaacaccatcccataccttctatc 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggtgcgattgactccaaacaccatcccataccttctatc 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)