BAC Information

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BAC

Clone NameMSMg01-503C23
Chromosome16 (Build37)
Map Location 51,719,889 - 51,720,354
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672778, 5330426P16Rik, EG639820, LOC627543
Downstream geneCblb, Alcam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503C23.T7 (MSMg01no503_c23.b1)MSMg01-503C23.TJ (MSMg01no503_c23.g1)
ACCAG578361AG578362
length7451,023
length of high quality
(start - end)		466 (66 - 531)---
definitionCHROMAT_FILE: MSMg01no503_c23.b1 PHD_FILE: MSMg01no503_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:24 2005CHROMAT_FILE: MSMg01no503_c23.g1 PHD_FILE: MSMg01no503_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTTTTNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CNAAATCCGCGGAATTCAATAAGCTATTGTGAGAGTGGAAAAATGAGAGA
CTATGTGTAGCAGTGAAGATCAAAGCAATGACAGGCCAAGACCCACACTG
CAGTAGAGCTCAAGGGCAGGGCTGTTTATACAATCTTTCCTCTTGTTTCC
TGCCTTCAAAGAGAATGTGTGTTATTTTTTCAAGGTATTTCTCCTGCCCA
CCTTGTTGTCAGTAAGGGGCATTACAGCTTTGGAGACCCATTGTTCATAA
GAAGAGCATTCCCATCACACTGAATTGCCACCTCTTAAAGCCATTAGCTG
TACTGGACTGGCTTTACTAAAGCGATATTAATTTTATTTTGACAAGGTTA
AAATACATATGAAAAGCTACAGTTCCAGTACAGCGAAAAACTAAGAGAGT
GAAAGAATAATCTGAACTCAGATGATACTATGTCTTCTGGTCAAATGCAA
CTGCCAACTGTACACAGTTTAGAACTGAAGAGAAACTCAGTTGAATGATT
GTATACATCAGATAATCCTATGGGAAATGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTCGTGTGTCTTTTCACCCGCTTTTTGACGTACGTACA
CCACTCCCCCTTTGTTGGCGCCCCCATTCCACACGTGGGGGTTTTCTGGG
CTGTATAACAAACTGCTTTTTCCATTCCTTGCCCCGATTAAAATA

GAATAACGCTGAAGAAAAAAAATAGGACGACAACCGTTTTGCGTTTTGGG
GTACCACAACTGAGGGCGAAAGTAAAAACTCGGGCGCCCGGGAGATGTAT
AATTGACCATTAGCCGCCTGACCTCTTGGGGCCCCCTGGCTAATAAAAAG
CGCGAAAATAAAAGCGTGTATAGCCGGAAATGGAGGTAGAACAGGACGAA
AAAGTGCGGAGGGGCACTTACACGCGGCTAGTATAGTACGCGCGGAGAGT
ATGGCCATTACCAGGGTTATCCCAGTCGAAGTTTTGGGGACGGAGATATA
CAACAAAGTATACCCTATGTTCAGCAAGATGCGTGTACGCGGCATGAGGG
TGGGGTGTGACAAACTGCGTGTCTTATACCGGCGTTCGGTGTTTTCCGGT
TATCCCGTAAAAGGGCCGGTGTGTGCTCGTTTTATTAGATTGGCAGTGAC
GGGCGGTAGGGGCGTGTCGCGTCAACATACGCGACAAGAAGGCGATAAGG
AGTATGTTAATTACGCCTATTCCGGCGCCCCCAATTGAACAAACCCGTAT
ATATTGTCCTTTATTATCCTCTCATATACGACCGATTCCACATTTTCTTA
CAGAGTACCCGCCACACGCCGTTTGTCGCGCGCGCGGATGCGACCCGGGC
ATTATTCGGCCGTACCGCACTAGACGATCCGTTGGAGAGGGAGAAGGAAT
TGTAAAATGGGGAGGCCTTCCGGCGCCGCGCGGCGCCCTAGTTAACCGGC
CGTTATTTTCCCAAATTTAACAAACAGCTCCCGAGCCGTTTAANATTTTC
ACTCCGCGCGTCCGTGTCCCGCGCTTACGCGGAATAGCGGGCTTATCGCG
CGGCTGCAACTCTTTTAGTGTTGACATTATCCCCCGCTGTTATACCACGC
CCCCTTCACCGCCTACCCGTTTTTATATTTCGAACCATTGCTCTTGTATG
CTGAGCAATAGTTCGGTGAGAACAGGCGCCATGACACATCACACGCCGCA
CGCTCTGTTTGTGTCGCCAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_c23.b1 MSMg01no503_c23.b1 CHROMAT_FILE:
MSMg01no503_c23.b1 PHD_FILE: MSMg01no503_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:24 2005
         (466 letters)



>mm_chr16_51719689_51720554
          Length = 866

 Score =  893 bits (462), Expect = 0.0
 Identities = 465/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaataagctattgtgagagtggaaaaatgagagactatgtgtagcagtgaagatcaaag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaataagcaattgtgagagtggaaaaatgagagactatgtgtagcagtgaagatcaaag 260

                                                                       
Query: 61  caatgacaggccaagacccacactgcagtagagctcaagggcagggctgtttatacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgacaggccaagacccacactgcagtagagctcaagggcagggctgtttatacaatc 320

                                                                       
Query: 121 tttcctcttgtttcctgccttcaaagagaatgtgtgttattttttcaaggtatttctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctcttgtttcctgccttcaaagagaatgtgtgttattttttcaaggtatttctcct 380

                                                                       
Query: 181 gcccaccttgttgtcagtaaggggcattacagctttggagacccattgttcataagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccaccttgttgtcagtaaggggcattacagctttggagacccattgttcataagaaga 440

                                                                       
Query: 241 gcattcccatcacactgaattgccacctcttaaagccattagctgtactggactggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattcccatcacactgaattgccacctcttaaagccattagctgtactggactggcttt 500

                                                                       
Query: 301 actaaagcgatattaattttattttgacaaggttaaaatacatatgaaaagctacagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaaagcgatattaattttattttgacaaggttaaaatacatatgaaaagctacagttc 560

                                                                       
Query: 361 cagtacagcgaaaaactaagagagtgaaagaataatctgaactcagatgatactatgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtacagcgaaaaactaagagagtgaaagaataatctgaactcagatgatactatgtct 620

                                                         
Query: 421 tctggtcaaatgcaactgccaactgtacacagtttagaactgaaga 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctggtcaaatgcaactgccaactgtacacagtttagaactgaaga 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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