BAC Information

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BAC

Clone NameMSMg01-503K16
Chromosome16 (Build37)
Map Location 48,259,525 - 48,259,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628776, EG667741, EG639644, EG637273
Downstream geneDppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503K16.T7 (MSMg01no503_k16.b1)MSMg01-503K16.TJ (MSMg01no503_k16.g1)
ACCAG578730AG578731
length726764
length of high quality
(start - end)
578 (82 - 659)58 (85 - 142)
definitionCHROMAT_FILE: MSMg01no503_k16.b1 PHD_FILE: MSMg01no503_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:01 2005CHROMAT_FILE: MSMg01no503_k16.g1 PHD_FILE: MSMg01no503_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTTTTTNCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAT
AGATCCGCGGAATTCAGAGCCTTTCCCTTCTCAGCACCCTCTCCCACTGG
TGCACTTCTAGCTAGAATGCTGCTTTCCGATCATAAGGAGTGGATCCCTA
TGCCCAGTTCAGGTGGGTTTCCCAGACTTGTTAAGCAGCAGATGACTAGA
GGACAAACTTGGCACACTGCCTTAGCCATGGTCTGGGTGTTAGCTATTCA
AGTATAGCAGAGGAGAACCAAGAGAGGAAGAAGATGGGAGGCTTTAGTGC
CTTCAGGTAAGGCCCAGATCAATGTCTTGGACAAGGAGTCCTAAGTGACC
ACTCCCTGACTTTGGTTATCACCGCAACGATCATTTACAACCTTTCAATA
ACAAGGACATCTTCCTTTGTCCCCTCAACACTTATTTTGCTTGTCTCCAC
TGTGTCTTTTGGTCTGATTTATTTCTTCTTTCATTAAGTGTTTATTGAAT
GTTGTCATGATTAACCAGGCATGACAGGTGCAGGTGATGTTACAATGAAC
AGATAGAAAGACTCGTGATGGAAGTTGTATCCTAGTGCAAAGAGGCTGAA
ATAATAAAACTTATAAACTATAACATAGTATAGAAAAACTGGGCAAGGCA
AGAGATACAGAGACATGATGAAAGGGCTACATTCAAGGATACCTGCACTG
GCTGGTTTTATGTGTCAACTGGACAC
CTTTATCTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCCATACATGTTTTTTTCTGCTTTA
TTTTGCTTTTCTTTTGCTTGCTTTTTTTGCTTGTTTGTTTGTTTGAGTGT
GAGTGTGTGTGTGCGTGTGTGTGTGCATGCCCGAGCCACCCACTTGCTTA
GATACATTCCTGTGAGCAACACCACTTACAACAAAAACACACTTTGACAT
GATTATTCATCCCCATAATCCTACCCTCCCTACGCTCATGCACGACGACT
ACCACAACACTCATCCCAATACCTTTTTTTACCAGACACAAACATCTTGA
AACACACAAACACAGTCCTCCTACAGCCATAACTAGATCCATACAGCCAT
TTATACCTCGACCCCCTAATACACATCTACACCCCCCCATGACACTCACT
AAATACCATGCCAAACTCATTATTTCAACTCCTACCACTGAATACCCACC
CCTTGTACCCACCCACCACATGCTCCACCTAACACCTAACCCACCCTTCC
ACCACCTATATCAATCTTCCCCCCACCCATAATATCCCCCCCCCCCCCTC
CCTTTTTCCCCCCTTCCCCCCCCCCCCCCCCTTTCATACTTCCATCCACC
CGTCACCCCCTTAAATCTCATCCCCACCTTTCTTATCCACACAACACCCT
TCTCGCAAAACAACTTTTAAACAACTCCTCCCAAATATATTCCCAACCTC
CTCGTCACTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_k16.b1 MSMg01no503_k16.b1 CHROMAT_FILE:
MSMg01no503_k16.b1 PHD_FILE: MSMg01no503_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:01 2005
         (578 letters)



>mm_chr16_48259243_48260220
          Length = 978

 Score =  543 bits (281), Expect = e-158
 Identities = 299/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 267 accactccctgactttggttatcaccgcaacgatcatttacaacctttcaataacaagga 326
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 587 accacttcctgactttggttatcaccgcagcgatcatttacaacctttcaataacaagga 528

                                                                       
Query: 327 catcttcctttgtcccctcaacacttattttgcttgtctccactgtgtcttttggtctga 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 catcttcctttgtcccctcaacacttattttgcttgtctccactgtgtcttttggtctga 468

                                                                       
Query: 387 tttatttcttctttcattaagtgtttattgaatgttgtcatgattaaccaggcatgacag 446
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctatttcttctttcattaagtgtttattgaatgttgtcatgattaaccaggcatgacag 408

                                                                       
Query: 447 gtgcaggtgatgttacaatgaacagatagaaagactcgtgatggaagttgtatcctagtg 506
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 407 gtgcaggtgatgttacaatgaacagatagaaagacttgtgatggaagttgtatcctagta 348

                                                                       
Query: 507 caaagaggctgaaataataaaacttataaactataacatagtatagaaaaactgggcaag 566
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caaagaggctgaaataagaaaacttataaactataacatagtatagaaaaactgggcaag 288

                
Query: 567 gcaag 571
           |||||
Sbjct: 287 gcaag 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)