Query= MSMg01no504_f22.b1 MSMg01no504_f22.b1 CHROMAT_FILE:
MSMg01no504_f22.b1 PHD_FILE: MSMg01no504_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:57 2005
(646 letters)
>mm_chr16_67601846_67602891
Length = 1046
Score = 1033 bits (534), Expect = 0.0
Identities = 537/538 (99%)
Strand = Plus / Minus
Query: 109 agaaacttttccaaaggctttctttcatctttctttgtttcatcgatgataaaagattca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 agaaacttttccaaaggctttctttcatctttctttgtttcatcgatgataaaagattca 987
Query: 169 tgtctcatggatctaaaggtgttctcactttaaaaagtagaccaaaaccaaaacaaaaga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 tgtctcatggatctaaaggtgttctcactttaaaaagtagaccaaaaccaaaacaaaaga 927
Query: 229 aaacaaaatttaaaaaaaacccaaaacaacaaaaaaccccacaaaacaccaacacaacca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aaacaaaatttaaaaaaaacccaaaacaacaaaaaaccccacaaaacaccaacacaacca 867
Query: 289 ccaacaaaaagacaaaccaacaataagtagaaaatctatgaatttctttgagattagaag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ccaacaaaaagacaaaccaacaataagtagaaaatctatgaatttctttgagattagaag 807
Query: 349 cagcaaagctggtaatccagctagagaaaagactgatggtaattaagactataaaagtaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cagcaaagctggtaatccagctagagaaaagactgatggtaattaagactataaaagtaa 747
Query: 409 gaatatcacagaaaaggcatagatattttgtatcctttatgtatatttttattactatga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaatatcacagaaaaggcatagatattttgtatcctttatgtatatttttattactatga 687
Query: 469 tataaaattcttctaggaagatttgatatgtaattatattccacatcctcagatcaatgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tataaaattcttctaggaagatttgatatgtaattatattccacatcctcagatcaatgt 627
Query: 529 ctaatggactcagtgtcctctgacatcatgacatcagtgtttagcatgaaaatgagttaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctaatggactcagtgtcctctgacatcatgacatcagtgtttagcatgaaaatgagttaa 567
Query: 589 ctagaactcactacaaatttggggattctccttcattttcaatatctggtatcaagca 646
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 ctagaactcactacaaatttgggaattctccttcattttcaatatctggtatcaagca 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_f22.g1 MSMg01no504_f22.g1 CHROMAT_FILE:
MSMg01no504_f22.g1 PHD_FILE: MSMg01no504_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:57 2005
(468 letters)
>mm_chr16_67451266_67452133
Length = 868
Score = 690 bits (357), Expect = 0.0
Identities = 462/555 (83%), Gaps = 89/555 (16%)
Strand = Plus / Plus
Query: 1 tttcttctaactggaggctctggcctcttttcttagatttttttgtttttaaagaaaaca 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 116 tttcttctaactggaggctctggcctcttttcttagattttttt--ttttaaagaaaaca 173
Query: 61 ttcagttgaaactttattaccattctttgagatttattcaagctttctttaaaaatcatc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ttaagttgaaactttattaccattctttgagatttattcaagctttctttaaaaatcatc 233
Query: 121 acaatatagaagtacaatgtcttcctcaaagacctaggatcctca--------------- 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 acaatatagaagtacaatgtcttcctcaaagacctaggatcctcactctgaaattagtca 293
Query: 165 ------------------------------------------------------------ 165
Sbjct: 294 gcaaggaagatagtcttctcttcctggatataggaaggtgggatgctaaaatcacatgaa 353
Query: 166 ------------aacaatgatggcttgataacaaaggaaaaatctttgaaagggtataga 213
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctttggttaacaaacaatgatggcttgataacaaaggaaaaatctttgaaagggtataga 413
Query: 214 acaaaataatgtacctaaaatatcccatttatgaactcttgtaatattgtctgatccttt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acaaaataatgtacctaaaatatcccatttatgaactcttgtaatattgtctgatccttt 473
Query: 274 cttaaatctcatctaagacactttaaaaatactctgcctcctccttttgtttcagtaaga 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttaaatctcatctaagacactttaaaaatactctgcctcctccttttgtttcagtaaga 533
Query: 334 tgaatacaatgtgaagtatatcttcccttttctgtggctattgtctttagtagtcttctt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgaatacaatgtgaagtatatcttcccttttctgtggctattgtctttagtagtcttctt 593
Query: 394 tacttattcaactttggtatatatcactttatatatatatatatatatgtatatatatat 453
||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct: 594 tacttattcaactttggtatatatcactttatatatatatacatatatatacatatatat 653
Query: 454 atatatatatatata 468
|||||||||||||||
Sbjct: 654 atatatatatatata 668
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 423 tatatatatatatatatatgtatatatatatatatatatata 464
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 664 tatatatatatatatatatgtatatatatgtatatatatata 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 175
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
