Query= MSMg01no504_k24.b1 MSMg01no504_k24.b1 CHROMAT_FILE:
MSMg01no504_k24.b1 PHD_FILE: MSMg01no504_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:22 2005
(549 letters)
>mm_chr16_78795552_78796500
Length = 949
Score = 685 bits (354), Expect = 0.0
Identities = 397/424 (93%), Gaps = 22/424 (5%)
Strand = Plus / Minus
Query: 1 tgactcaaactagcttgtttaaccatgtgaaaaattatggtactatcaattgaaataatg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 408 tgactcaaactagcttgtttaaccatgtgaaaaattatggtgctatcaattgaaataatg 349
Query: 61 ggaagaataacattttttaaaatgtaaagtggtttcaaaagagatgttgacctcacttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaagaataacattttttaaaatgtaaagtggtttcaaaagagatgttgacctcacttaa 289
Query: 121 acctgaaatatgaacacatgggtgtaaaatatgaatcagatgctgtattcgttagggatg 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acctgaaatatgaacacatgagtgtaaaatatgaatcagatgctgtattcgttagggatg 229
Query: 181 tctagagtaatggaatttatagaatgaatctctctctctctctctctctctctctctctc 240
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 228 tctagagtaatggaatttatagaatgaa----------------tctctctctctctctc 185
Query: 241 ttcacacacatatgtatg--tatatatgtatatatacatatatacacac----acatata 294
|||||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 184 ttcacacacatatgtatgtatatatatgtatatatacatatatacacacatatatatata 125
Query: 295 tatacatatatatgtgatttattagaattagaatgattttcaacctgtgattctgctaat 354
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tatacatatatgtgtgatttattagaattagaatgattttcaacctgtgattctgctaat 65
Query: 355 acaacaatggctgcttatgaatggaaagtacaataatccagtaattacttagttcccaaa 414
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 acaacaatggctgcttatgaatggaaagttcaataatccagtaattacttagttcccaaa 5
Query: 415 gctg 418
||||
Sbjct: 4 gctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_k24.g1 MSMg01no504_k24.g1 CHROMAT_FILE:
MSMg01no504_k24.g1 PHD_FILE: MSMg01no504_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:22 2005
(561 letters)
>mm_chr16_78647260_78648220
Length = 961
Score = 963 bits (498), Expect = 0.0
Identities = 546/562 (97%), Gaps = 3/562 (0%)
Strand = Plus / Plus
Query: 1 ataacaacagaagggatccaacagaggatctttgggtgatgagtgagaagcgtgtgatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataacaacagaagggatccaacagaggatctttgggtgatgagtgagaagcgtgtgatcc 260
Query: 61 aaagtccacaggaattaagaagcaatgtgactgagaacatacacagggaaacatttttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtccacaggaattaagaagcaatgtgactgagaacatacacagggaaacatttttgg 320
Query: 121 aggagacaaacatctcctgttaacactcgaaggaagcaggatattggtcaaagataagat 180
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 321 aggagacaaacatctcctgttaacactcaaaggaagcagggtattggtcaaagataaggt 380
Query: 181 cttgatgatttctggtctttggttttccacttaggtaggtgtcttagtcagggtttctat 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 cttgatgatttctggtctttggttttccacttaggtaggtgtcttcgtcagggtttctat 440
Query: 241 tcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttatttggcttac 300
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tcctgcacaaacatcacgaccaagaagcaagttggggaggaaagagtttatttggcttac 500
Query: 301 acttccatgttgctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcagaa 360
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 acttccatgttgctgtttatcaccaaaggaagtcaggactggaactcaagcaggtcagga 560
Query: 361 agcaggagctgatgcagaagccatggagggatgttccttactggcttgcttctcctggct 420
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcag-agctgatgcagaggccatggagggatgttccttactggcttgcttctcctggct 619
Query: 421 tgctcagcctgctctcttatagaaccaagactaccagcccagagatggtctcacccacaa 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 620 tgctcagcctgctctcttatagaactaagactaccagcccagagatggtctcacccacaa 679
Query: 481 ggggcctttcccccttgatcactaattgagaaaatgccttgccgctggatctcatgg-ag 539
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 680 ggggcctttcccccttgatcactaattgagaaaatgccttacagctggatctcatggtag 739
Query: 540 gcatttcctcaactgaagctcc 561
||||||||||||||||||||
Sbjct: 740 t-atttcctcaactgaagctcc 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
