Query= MSMg01no505_p02.b1 MSMg01no505_p02.b1 CHROMAT_FILE:
MSMg01no505_p02.b1 PHD_FILE: MSMg01no505_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:58 2005
(597 letters)
>mm_chr16_24377967_24378963
Length = 997
Score = 826 bits (427), Expect = 0.0
Identities = 480/513 (93%), Gaps = 25/513 (4%)
Strand = Plus / Minus
Query: 5 gaattctattatatctcattcttccttaaatatttcaagtacccccttaaagcggacact 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaattctattatattttattcttccttaaatatttcaagtacccccttaaagcggacact 430
Query: 65 tgactttataaatactagagatttattaggaaactacacattgccaaggggttgctacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgactttataaatactagagatttattaggaaactacacattgccaaggggttgctacag 370
Query: 125 actagtggaagctttaaacacaactatgttcaactactgtagagagtgatgtggtaagat 184
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 369 actagtggaagctttaaacacaactatgttcaactactgtagagactgatgtaataagat 310
Query: 185 gtagataggatggggccttctaggagcatagaggtatacacgggtctgggggaatagaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtagataggatggggccttctaggagcatagaggtatacacgggtctgggggaatagaat 250
Query: 245 agacaagtcctaaagaaagagtacgtaaggcaggagaaatggcttggttatgagcgcata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agacaagtcctaaagaaagagtacgtaaggcaggagaaatggcttggttatgagcgcata 190
Query: 305 ctgtcttcccgagaaccagggtttattcctcactaccgacatcctaatgtgtctcgagtt 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 189 ctgtcttcccgagaaccagggtttattcctcactacccacatcctaatgtgtctcgagtt 130
Query: 365 ccagagcatccaaggccatcttctgcctccccctagcacccgtacacacacacacacaca 424
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccagagcatccaaggccatcttctgcctccccctagcacccgt----------------- 87
Query: 425 cacacacacacacacacacacacacacacacacacacacacacactcatagcaaaaaaaa 484
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 86 -------acacacacacacacacacacacacacacacacacacactcaaagcaaaaaaaa 34
Query: 485 a-tcttaaaaagaaaaacaaaacaacaacaaaa 516
| |||||||||| ||||||||||||||||||||
Sbjct: 33 aatcttaaaaagcaaaacaaaacaacaacaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_p02.g1 MSMg01no505_p02.g1 CHROMAT_FILE:
MSMg01no505_p02.g1 PHD_FILE: MSMg01no505_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:58 2005
(560 letters)
>mm_chr16_24314231_24315190
Length = 960
Score = 847 bits (438), Expect = 0.0
Identities = 523/586 (89%), Gaps = 59/586 (10%)
Strand = Plus / Plus
Query: 1 atatatccaacgggggaagtactttttctaacactacaactcgattaacttgggattttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atatatccaacgggggaagtactttttctaacactacaactcgattaacttggg-ttttt 259
Query: 61 ttcttcctgcttgcttgtatttttcataattttttttt---gctcaaaatctctaattgc 117
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 260 tt--tcctgcttgcttgtatttttcataattttttttttttgctcaaaatctctaattgc 317
Query: 118 agatgtattaaatgcagtggatctga-----------------------ctgtgctatca 154
|||||||||||||||||||||||||| |||||||||||
Sbjct: 318 agatgtattaaatgcagtggatctgatgtattaaatgcagtggatctgactgtgctatca 377
Query: 155 ccagcacacacacacacacacacacacacacacacacacatatatatatatatatacaca 214
||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccagcacacacacacacacacacacacacacacacacaca-------------------- 417
Query: 215 cacatatatataatatttctgttctccattttttaaccctgtactggtgtactggggagt 274
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 418 cacatata----atatttctgttctccatgctctaaccctgtactggtgtactggggagt 473
Query: 275 gttatatggtacaatataaggaacttgaaaggttacttacttcagtaattaactgaatta 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gttatatggtacaatataaggaacttgaaaggttacttacttcagtaattaactgaatta 533
Query: 335 acactaatcagagctcagtagttccacctttacaatgaggagccggactggtgttcaata 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 acactaatcagagctcagtagttccacctttacaatgaggagccggactggtgttcaata 593
Query: 395 taatcacacagcctctatgccttaggaccccgggactgagtaggtcaatgagtaggtcag 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taatcacacagcctctatgccttaggaccccgggactgagtaggtcaatgagtaggtcag 653
Query: 455 gtgagataagaaggaaagtttctcacatgcacaggaactgaaagatagcaatagaatcaa 514
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 654 gtgagataagaaggaaagtctctcaca------ggaactgaaagatagcaatagaatcaa 707
Query: 515 acaaccctggagccttagggtctgaatgctggcctttcctgccaga 560
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 acaaccctggagccttagggtctgaatgctggcctttcctgccaga 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
