BAC Information

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BAC

Clone NameMSMg01-506L19
Chromosome16 (Build37)
Map Location 4,129,248 - 4,289,681
singlet/doubletdoublet
Overlap geneCrebbp, EG436332, Adcy9
Upstream geneLOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1
Downstream geneEG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506L19.T7 (MSMg01no506_l19.b1)MSMg01-506L19.TJ (MSMg01no506_l19.g1)
ACCAG581058AG581059
length766774
length of high quality
(start - end)		723 (44 - 766)650 (74 - 723)
definitionCHROMAT_FILE: MSMg01no506_l19.b1 PHD_FILE: MSMg01no506_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:02 2005CHROMAT_FILE: MSMg01no506_l19.g1 PHD_FILE: MSMg01no506_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,129,248 - 4,129,958)(4,289,128 - 4,289,681)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTCCAGTAGCGCCCTAGGCTACACTATATTATATTTGACTGACTG
ACAGATCTGCCCAAAATTAACAGATGGAACAAGCGAGACTTGAGGATCCC
AAATGAGCTTTAATTAATTTAGGTGTCACCTCAGTATCACTGATATTCAG
GATGTAGATGTGCCTCATGTAGCTGACCCAAAGCTACAAGCAGCACACAG
AACAGCTGTCCCACCTGGCTGTCTAACCCCAGGAATTAGAAGGAAAAAAA
CAGTGTCCACATAATAAACTCATCCATACTTCTTTGGTCATTTCAAGTTT
AACCAATCCACCCACCCATATAATCCATCCATTTGATGAGTTTTCTGTAT
GGCAGAGGTTTTCTGTCACACTATTTTTTATTTATTTTTTTATTTTTTTT
AAAAGAGGTCCAGGGACTGGTGAGATGGCTCAGCGGGTAAGAGCACTGAC
TGCTCTTCTGGTGCATCTGAAGACAGCTACAGAATACTTATTTATCATAA
ATCTTTGGGCTGGAGCGAGCAGGGTCTGAATCAGCCTGACCTGAGCAGAG
GTCCTAAATTCAATTCTCAACAACCAGATGAAGGCTCATAACCACCTGTA
CAGCTATAGTGTACTCACATACATAAAATAAATACATAAATCTTAAAAAA
AGAGGTCTTTTTAAAAACTTACAGAAGGCTTAGAGTTATGTTAAAAGTAA
AATCACAAAGACATGC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAACCTCTTGAAAAGTAGTCAGTGCT
CTTAACAGCTGAGCCATCTCTCCAGCCCAGGGAAAAGTATTTGCATGTGT
CAGTATGTCTTTGTATGTCACATGTGTCTCCATAGATGTGTTGAGAGGAA
GCAGAGAGGCAATTTAAAAATTGTAAAACCCAGATGAAGCACATCCAAGT
TTTATGAAATTTAATGTTTCCATAAAGTTGAGATTTTCTAAAAGAAATAG
TTGAGGAGAAAGAAAGGTTTGTTGTTCGTTGTTTTTGTTTTAAAAATCTA
ATGCATTTTTCTAAAAAGCAGTTACAGCTGGGCCTAGTGGTCCAGGCTTG
TCATTCTAGTATGTGGGTATGGAGGCAGGAGGATAAATTCCAGGCCCGCC
TCCAGTTGCATAGCAAGTTCAAGGCCAGCCTTGGCTGCATAAGACAAGAA
ATCAAATTAAATATGAATAAACCAAAAGCACCCGTGAAGCCTACAAAACA
GCCAGGCTGCTTTCTGGCCGCATGGGTTGAGGGTACTGCTAGGCCACACT
GGGCAGAGTGCACATTCTCAGTGTAGGCTTGGCACTGTGTCATGTCTCAT
CTCTCTGCTCCGCAGTGCCCAGAGGAACCCATGCAACAGCTCANTGCTGC
ANGACGGCAGGAGGCCGGCCAGCCTCATAGGCAAGGAGCTTATCCTCACC
TTCTTCCTCCTGCTCCCTCTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_l19.b1 MSMg01no506_l19.b1 CHROMAT_FILE:
MSMg01no506_l19.b1 PHD_FILE: MSMg01no506_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:02 2005
         (723 letters)



>mm_chr16_4129045_4130167
          Length = 1123

 Score = 1319 bits (682), Expect = 0.0
 Identities = 707/720 (98%), Gaps = 9/720 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttccagtagcgccctaggctacactatattatatttgactgactgacagat 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttccagaagagccctaggctacactatattatatttgactgactgacagat 263

                                                                       
Query: 64  ctgcccaaaattaacagatggaacaagcgagacttgaggatcccaaatgagctttaatta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcccaaaattaacagatggaacaagcgagacttgaggatcccaaatgagctttaatta 323

                                                                       
Query: 124 atttaggtgtcacctcagtatcactgatattcaggatgtagatgtgcctcatgtagctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttaggtgtcacctcagtatcactgatattcaggatgtagatgtgcctcatgtagctga 383

                                                                       
Query: 184 cccaaagctacaagcagcacacagaacagctgtcccacctggctgtctaaccccaggaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccaaagctacaagcagcacacagaacagctgtcccacctggctgtctaaccccaggaat 443

                                                                       
Query: 244 tagaaggaaaaaaacagtgtccacataataaactcatccatacttctttggtcatttcaa 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 tagaaggaaaaaaacagtgtccacataataaactcatccagacttctttggtcatttcaa 503

                                                                       
Query: 304 gtttaaccaatccacccacccatataatccatccatttgatgagttttctgtatggcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttaaccaatccacccacccatataatccatccatttgatgagttttctgtatggcaga 563

                                                                       
Query: 364 ggttttctgtcacactattttttatttatttttttattttttttaaaagaggtccaggga 423
           |||||||||||||||||||||||||||||||||||        |||||||||||||||||
Sbjct: 564 ggttttctgtcacactattttttatttattttttt--------taaaagaggtccaggga 615

                                                                       
Query: 424 ctggtgagatggctcagcgggtaagagcactgactgctcttctggtgcatctgaagacag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctggtgagatggctcagcgggtaagagcactgactgctcttctggtgcatctgaagacag 675

                                                                       
Query: 484 ctacagaatacttatttatcataaatctttgggctggagcgagcagggtctgaatcagcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctacagaatacttatttatcataaatctttgggctggagcgagcagggtctgaatcagcc 735

                                                                       
Query: 544 tgacctgagcagaggtcctaaattcaattctcaacaaccagatgaaggctcataaccacc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgacctgagcagaggtcctaaattcaattctcaacaaccagatgaaggctcataaccacc 795

                                                                       
Query: 604 tgtacagctatagtgtactcacatacataaaataaatacataaatcttaaaaaaagaggt 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 796 tgtacagctatagtgtactcacatacataaaataaatacataaatcttaaaaaa-gaggt 854

                                                                       
Query: 664 ctttttaaaaacttacagaaggcttagagttatgttaaaagtaaaatcacaaagacatgc 723
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cttttaaaaaacttacagaaggcttagagttatgttaaaagtaaaatcacaaagacatgc 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no506_l19.g1 MSMg01no506_l19.g1 CHROMAT_FILE:
MSMg01no506_l19.g1 PHD_FILE: MSMg01no506_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:02 2005
         (650 letters)



>mm_chr16_4289128_4290177
          Length = 1050

 Score = 1048 bits (542), Expect = 0.0
 Identities = 551/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacctcttgaaaagtagtcagtgctcttaacagctgagccatctctccagcccaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaaacctcttgaaaagtagtcagtgctcttaacagctgagccatctctccagcccaggga 495

                                                                       
Query: 61  aaagtatttgcatgtgtcagtatgtctttgtatgtcacatgtgtctccatagatgtgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaagtatttgcatgtgtcagtatgtctttgtatgtcacatgtgtctccatagatgtgttg 435

                                                                       
Query: 121 agaggaagcagagaggcaatttaaaaattgtaaaacccagatgaagcacatccaagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agaggaagcagagaggcaatttaaaaattgtaaaacccagatgaagcacatccaagtttt 375

                                                                       
Query: 181 atgaaatttaatgtttccataaagttgagattttctaaaagaaatagttgaggagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atgaaatttaatgtttccataaagttgagattttctaaaagaaatagttgaggagaaaga 315

                                                                       
Query: 241 aaggtttgttgttcgttgtttttgttttaaaaatctaatgcatttttctaaaaagcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaggtttgttgttcgttgtttttgttttaaaaatctaatgcatttttctaaaaagcagtt 255

                                                                       
Query: 301 acagctgggcctagtggtccaggcttgtcattctagtatgtgggtatggaggcaggagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acagctgggcctagtggtccaggcttgtcattctagtatgtgggtatggaggcaggagga 195

                                                                       
Query: 361 taaattccaggcccgcctccagttgcatagcaagttcaaggccagccttggctgcataag 420
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 194 taaattccaggcccacctccagctgcatagcaagttcaaggccagccttggctgcataag 135

                                                                       
Query: 421 acaagaaatcaaattaaatatgaataaaccaaaagcacccgtgaagcctacaaaacagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 134 acaagaaatcaaattaaatatgaataaaccaaaagcacccgtgaagcctgcaaaacagcc 75

                                                                       
Query: 481 aggctgctttctggccgcatgggttgagggtactgctaggccacactgggcagagtgcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aggctgctttctggccgcatgggttgagggtactgctaggccacactgggcagagtgcac 15

                         
Query: 541 attctcagtgtagg 554
           ||||||||||||||
Sbjct: 14  attctcagtgtagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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