BAC Information

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BAC

Clone NameMSMg01-506M07
Chromosome16 (Build37)
Map Location 55,943,796 - 56,109,531
singlet/doubletdoublet
Overlap geneLOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
Upstream geneLOC667927, LOC436421, Zpld1, Nfkbiz, Gm1752, Lrriq2, EG667966
Downstream geneImpg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506M07.T7 (MSMg01no506_m07.b1)MSMg01-506M07.TJ (MSMg01no506_m07.g1)
ACCAG581081AG581082
length738745
length of high quality
(start - end)
355 (79 - 433)662 (84 - 745)
definitionCHROMAT_FILE: MSMg01no506_m07.b1 PHD_FILE: MSMg01no506_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:05 2005CHROMAT_FILE: MSMg01no506_m07.g1 PHD_FILE: MSMg01no506_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,943,796 - 55,944,150)(56,108,870 - 56,109,531)
sequence
ACATTAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGGA
GGCGCGGAATTCCACTAATTAACTCTGAAAGCCTCCCAGAAAGGTAGTAT
TTCCTGGCAGGCCCAGGACCTACTTTTACATCTATCCCCACTGTATATTC
TATCCCCAGCTCTGTCTCCCAAACCCATCTATCTGCCCCACTGTAACTGG
AATGATCCAAGCAAGACAATGAAATGCTCTTTATCACGTCAATCTTCCCC
CCTCAAAACCTTCCCACTTGAAATTCAACTTTCTATGGCCAGACCTAGGC
TGGCCTCACTCGACTTGCCAGTATTCACTTCTGCTCGTTAGCCTTCGTTG
CTTCTCACAGAGGGACTGACACAAAGAAACCTGTGTCTGGAAAAGTTAAC
GGGCTCATATAACAAGGACGGACTGAAAGGTAGATGAAGCCCGGAAGGAG
ACTTGGGCCTGGGAACTTATGCCGAACTTCCGGGAGGGGATTATATACAA
AGTTCAGATAACACACAGGGAAGTCAGCACAGGACAGCGATAACATTCGG
GTGTTTGTGTTTTTGATAGGTGCGAGGCTGCTCTTACTCTGACACTATCT
GACCTCAAACTCAGTCCTGCCACAGACTTCTGGCGTGCCAGGATTACAGA
CCTTGCCACCGTGCCTGGATATATCTATGGATTCCGCAATCTATCATATG
ACGAAATTGCCTCGTTAATTACGATTTAATTTTTCACT
GTGTGAGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTTACTTCCTAATA
TTAATTACTAATTAGTCCTTAATTAGTACTAATTAGTAACCAATGCTAGT
AATTCCCACTTAATTATTCTCATACGACACATCACACGGTACACTATAGA
TAGATATGTCTATATAGACATGTACATATGTGGTTTACACAATGAATAAA
AAAGAGGCTGCAGCAGAGTTCAACGGCTTGAGAAATGAACTGAGAGAAGA
GACTATAGTAATAGAGTAAGGAACCAAGATCAGCACCAAGAAGGGGTTGT
TGCTGGAGAGCAAAGTAATAGAGTCCAGCTATGACATCAAAGGCCAACCA
GGAGTCCAAATGCAAGAAACTGAGGATTCGGACCAGGCAAAAAAGTGGGC
AGGTGGGCAGGTAAATAAAGTCAACAGCAGACAACGGTGAGCAGAAACCT
CAGGAATAGTTCAGAGTTCTCTCCTTGTTAGTCTTTGATGTACATCAAGA
CACATCAGTTATCACATTACAGGTTGATATAGGACCATACCACCCCAGGG
TTAGGTATCCACATGTCTTAGTTAGGATTTCATTGCATTATTTCTTCAGA
TGAGAAGATGATATGACAGCCATTCTCGAGCATTTTAGTTCTTTCTGAAC
TCTGGCTGTCTCAACTCTGCTGCTCTGGCCTAAACTCCTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_m07.b1 MSMg01no506_m07.b1 CHROMAT_FILE:
MSMg01no506_m07.b1 PHD_FILE: MSMg01no506_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:05 2005
         (355 letters)



>mm_chr16_55943596_55944350
          Length = 755

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcctcccagaaaggtagtatttcctggcaggcccaggacctacttttacatctatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctcccagaaaggtagtatttcctggcaggcccaggacctacttttacatctatccc 260

                                                                       
Query: 61  cactgtatattctatccccagctctgtctcccaaacccatctatctgccccactgtaact 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgtatattctatccccagctctctctcccaaacccatctatctgccccactgtaact 320

                                                                       
Query: 121 ggaatgatccaagcaagacaatgaaatgctctttatcacgtcaatcttcccccctcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatgatccaagcaagacaatgaaatgctctttatcacgtcaatcttcccccctcaaaa 380

                                                                       
Query: 181 ccttcccacttgaaattcaactttctatggccagacctaggctggcctcactcgacttgc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttcccacttgaaattcaactttccatggccagacctaggctggcctcactcgacttgc 440

                                                                       
Query: 241 cagtattcacttctgctcgttagccttcgttgcttctcacagagggactgacacaaagaa 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cagtattcacttctgctcgttagccttcgatgcttctcacagagggactgacacaaagaa 500

                                                                  
Query: 301 acctgtgtctggaaaagttaacgggctcatataacaaggacggactgaaaggtag 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctgtgtctggaaaagttaacgggctcatataacaaggacggactgaaaggtag 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no506_m07.g1 MSMg01no506_m07.g1 CHROMAT_FILE:
MSMg01no506_m07.g1 PHD_FILE: MSMg01no506_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:05 2005
         (662 letters)



>mm_chr16_56108733_56109794
          Length = 1062

 Score = 1257 bits (650), Expect = 0.0
 Identities = 659/662 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcttacttcctaatattaattactaattagtccttaattagtactaattagtaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aatcttacttcctaatattaattactaattagtccttaattagtactaattagtaaccaa 740

                                                                       
Query: 61  tgctagtaattcccacttaattattctcatacgacacatcacacggtacactatagatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgctagtaattcccacttaattattctcatacgacacatcacacggtacactatagatag 680

                                                                       
Query: 121 atatgtctatatagacatgtacatatgtggtttacacaatgaataaaaaagaggctgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atatgtctatatagacatgtacatatgtggtttacacaatgaataaaaaagaggctgcag 620

                                                                       
Query: 181 cagagttcaacggcttgagaaatgaactgagagaagagactatagtaatagagtaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagagttcaacggcttgagaaatgaactgagagaagagactatagtaatagagtaaggaa 560

                                                                       
Query: 241 ccaagatcagcaccaagaaggggttgttgctggagagcaaagtaatagagtccagctatg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccaagaccagcaccaagaaggggttgttgctggagagcaaagtaatagagtccagctatg 500

                                                                       
Query: 301 acatcaaaggccaaccaggagtccaaatgcaagaaactgaggattcggaccaggcaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acatcaaaggccaaccaggagtccaaatgcaagaaactgaggattcggaccaggcaaaaa 440

                                                                       
Query: 361 agtgggcaggtgggcaggtaaataaagtcaacagcagacaacggtgagcagaaacctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agtgggcaggtgggcaggtaaataaagtcaacagcagacaacggtgagcagaaacctcag 380

                                                                       
Query: 421 gaatagttcagagttctctccttgttagtctttgatgtacatcaagacacatcagttatc 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaatagatcagagttctctccttgttagtctttgatgtacatcaagacacatcagttatc 320

                                                                       
Query: 481 acattacaggttgatataggaccataccaccccagggttaggtatccacatgtcttagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acattacaggttgatataggaccataccaccccagggttaggtatccacatgtcttagtt 260

                                                                       
Query: 541 aggatttcattgcattatttcttcagatgagaagatgatatgacagccattctcgagcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggatttcattgcattatttcttcagatgagaagatgatatgacagccattctcgagcat 200

                                                                       
Query: 601 tttagttctttctgaactctggctgtctcaactctgctgctctggcctaaactcctttcc 660
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 199 tttagttctttctgaactctggctgtctcaactctgctgctctgtcctaaactcctttcc 140

             
Query: 661 aa 662
           ||
Sbjct: 139 aa 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)