Query= MSMg01no507_f14.b1 MSMg01no507_f14.b1 CHROMAT_FILE:
MSMg01no507_f14.b1 PHD_FILE: MSMg01no507_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:52 2005
(693 letters)
>mm_chr16_50297331_50298426
Length = 1096
Score = 984 bits (509), Expect = 0.0
Identities = 560/581 (96%), Gaps = 11/581 (1%)
Strand = Plus / Plus
Query: 119 atatattattgggttatttttcattatttatacatat-aaaataaaaatcatactatata 177
||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 321 atatattgttgggttatttttcattatttatatatataaaaataaaa---atactatata 377
Query: 178 aaattattacatatagtttgcataaaatcaaataaatttcttactagtaagactttagtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaattattacatatagtttgcataaaatcaaataaatttcttactagtaagactttagtg 437
Query: 238 tttctcatatattcagaagtctattaaaccaacttc-aaaaaattttaaggctcatcttg 296
|||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||
Sbjct: 438 tttctcatatattcaggagtctattaaaccaacttcaaaaaaaatttagggctcatcttg 497
Query: 297 aaggtatgttaccaaatagttatat----tcctattccaatttctcctctactacaaata 352
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 498 aaggtatgttaccaaatagttatatggaaccctattccaatttctcctctactgcaaata 557
Query: 353 ccgtgtatgagctgatatgaagaaaatgcatgttctgggaggagcaagatgcaagtgtgt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccgtgtatgagctgatatgaagaaaatgcatgttctgggaggagcaagatgcaagtgtgt 617
Query: 413 cagccatctcacttggagacatgaagggccttagtctttgttcccagcccataactgtga 472
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 cagccatctcacttggagacatgaagggccttagtctttgttcccagcccgtaactgtga 677
Query: 473 ctctcgggacctggctagaattggccaccaagaaaaaaggcagtcagaaattttgcactg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctctcgggacctggctagaattggccaccaagaaaaaaggcagtcagaaattttgcactg 737
Query: 533 tttggatttctaacaagaaaacaacaaatccctctgacaccattataaaggaaaaacaaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttggatttctaacaagaaaacaacaaatccctctgacaccattataaaggaaaaacaaa 797
Query: 593 acaaaaatagctgtcttatatattaaaattggaatccacaacttctcaaattgaagaaag 652
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 798 acaaaaatagctgtcttatat--taaaattggaatccacaacttctcaaattgaagaaag 855
Query: 653 gcaaaagttggccacagtcacttctggatttagacttgtag 693
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 856 gcaaaagttggccatggtcacttctggatttagacttgtag 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1096
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1086
Effective search space: 741738
Effective search space used: 741738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_f14.g1 MSMg01no507_f14.g1 CHROMAT_FILE:
MSMg01no507_f14.g1 PHD_FILE: MSMg01no507_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:52 2005
(571 letters)
>mm_chr16_50480260_50481230
Length = 971
Score = 862 bits (446), Expect = 0.0
Identities = 452/454 (99%), Gaps = 1/454 (0%)
Strand = Plus / Minus
Query: 119 ggagacctgctcaggaagtattcatttgtactgttcttgcaagaaaccacaacccagtcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 ggagacctgctcaggaagtattcatttgtactgttcttgcaagaaaccacaacccagtcc 912
Query: 179 ccagtatccactttggacagcttatggccattga-tgtaactccaaatgcaggtgatggg 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 911 ccagtatccactttggacagcttatggccattgactgtaactccaaatgcaggtgatggg 852
Query: 238 gtgctctcttctatcgtctcaggcacctggactcacatatacatactggccctcctacat 297
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 851 gtgctctcttctatcgtctcaggcaactggactcacatatacatactggccctcctacat 792
Query: 298 acacataatttaaaaacaaatatttttttaaaaccactatagtggaaatagaatgtagga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 acacataatttaaaaacaaatatttttttaaaaccactatagtggaaatagaatgtagga 732
Query: 358 actatagatgtagattgaggataatctaaaactagattattcagacctttgggtgatggc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 actatagatgtagattgaggataatctaaaactagattattcagacctttgggtgatggc 672
Query: 418 tgaaagtgctaggtcactgcgtgctgacggcagcgcctgccactggaaatgctccaattg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgaaagtgctaggtcactgcgtgctgacggcagcgcctgccactggaaatgctccaattg 612
Query: 478 tgttacagggtgaaaactactcattttaaagtatgaaataaagcagttatcaattcctat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgttacagggtgaaaactactcattttaaagtatgaaataaagcagttatcaattcctat 552
Query: 538 ttgccaagctcctctaatttgacatcctctcctt 571
||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgccaagctcctctaatttgacatcctctcctt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
