BAC Information

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BAC

Clone NameMSMg01-508C10
Chromosome16 (Build37)
Map Location 23,430,356 - 23,430,919
singlet/doubletsinglet
Overlap geneRtp1
Upstream geneEtv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1
Downstream geneMasp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508C10.T7 (MSMg01no508_c10.b1)MSMg01-508C10.TJ (MSMg01no508_c10.g1)
ACCAG582131AG582132
length7641,556
length of high quality
(start - end)
571 (51 - 621)---
definitionCHROMAT_FILE: MSMg01no508_c10.b1 PHD_FILE: MSMg01no508_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:57 2005CHROMAT_FILE: MSMg01no508_c10.g1 PHD_FILE: MSMg01no508_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAACTCTAAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGCT
CCGCGGAATTCATTCTTCTTCTATAAAATGCTCTGGGTACATTAAGTGAG
CCCTCTCTGCCCATACTTTGTGGAAGTCCAATAGCAAATCTGAATTTTGC
AGGCTAAGAGATACAGAAGCCTGTCAACACTGAACAGGCTAGCACTGGCC
CAGAGCAAATGCATTCCCACGTCCTGGAAGTGGAGGCACTGTGAGATCAA
CATGACCCACCTTCCCCCAGGGGCCAGAATCTCCCACTGACTGAGGCCAG
CAGGGATTCACAAGTCAGTGACCAAGTCTGAGTTAGCCACAAATCCTGCC
CACCCTACCCTACGAGAACCTCCGGGAAGCAGCACCCTCCTACCATCTGA
TCCAGGCGCCCCATGTTTTCATTTTAGCCATTGGGTTTATTCACATATTT
AACAGCTATTTCCCTCACTCAGGCCATGTCAGAACTGTAGGGGCCACAGA
AATCACCTATCGTTCATTTTGGTTCAAGACACGGCATAAGAGCCCTTGGT
GTACACACATTTATTTACTGAGAGTCAGAATCAGCGTCCAGCAATGCTGG
CAGGAGACAACTTGAGAATAAGCCAAGCTAAGCAGGGAGGCCTTCGCTTT
TAACCAGACACCTGTACTACCTTTCTGCCCTCACTCANGCCCCCAAAGTA
AGACTTAAAATAACCCCTCGACTGAACCCCCGGACTANAAGGTACCTTTC
TCGGGTATCTTTGG
CCTTTTTCCCTCTGTTCTTGTGGNAGCGCTTACCTCGCGTCCGCGGCGAC
GGTTTCTTTCTCTCACTAACAATGCGGAGTTNTGTATATGTGAATGGTTT
TCTCTTCTCTCCCTATTATAAGAGGAGATAGTGACTGCACCATTCCTGTA
TCACGCATAAGACCTGAAGTGTTTAAGAGCGATTGTAGTGAGTCTACCCT
CGCCGCGTCGGTTGTGTGTTGTCAGCACCTCTGTGTGGCCGCGAGAGATA
TGGATATCGTTTTACACGGATGCACAAATACGCCGGGAGTTTAATAAGAT
TAGTTATACCAGAACGGACGCCACCGATAGATGCGCATCTGTATAAATCG
CACCGAGGAGCGAGGAAGACGTGCAACAGTGGTGTGGTGCGGGCGCGCCG
CCACGTCACTGCGCGTTGTCTTATCTCGCACAACTTGTTCGTGCTTGTTG
TCGGTGGTGTACTCTGGTGTCGTGTCGATGTAGTGCCCTACGNCTGTTTG
TTGTGTGTTGACGTATTTTACTGACCACCCAGACTACCATATTNTAATGG
AAAGACTATAGTNTACCACATACAATCATACGACATCCATATAATACATT
ATAGGCTCCGCGTACCGAACACGCGGACCAGGCGAGTATAGTATATGGTG
TCGTGGCGGTCTCCTCTTATATTACACGACTACGCCACATATCTCAGTAA
CCCGGATGATGTGTAGATCAACCGCGCCGCATGCCTGTAGTTATTCGGAC
GCGATAATGGGCGTCTTTCGTCATGTCGCCGGCCGNANGCGTTGGAGCGA
CTCGTATGATCGAATCAGGCACCTACTATACGGGATGATGACTATATATA
TACAGCCATACATATCTAATCGCTAGTGCGACTCCGTACACAGTGACGCG
TACTTAGATAGATATCGACACCACGCGATCTCATTTTATATATCACGATA
ATGAGCTGTCGCCACTCNCTTATGTCTGATCATGTGGACCTGATGTGATG
TAGATGCCATGATGTCTTCACTTGCTCACTCNCTATCACAAACCCACACT
GTCACCGTAGTGAGTGTGTAGGCGCGTTAGTTCACGGNTCATAGTGCGAC
TACTCGACACACGAGCTATGGAGTAGCTCGAAGCTCCATGTGTGAGATAA
CATCCGTCGCGAGCACGCGTCCGCTACTGTCTGATACACACACCCGACTN
GATATATCTATTGCGCGCATCACATACTATATACTGCCTCGCGCCTATGC
AACACTGAGATAGCACGCTACGCTATGAAAGATGGGATAGTACGNGTGTC
TCGCCCCGCATCCTCTATCTTGATTTGTNGACATCACTCACGGTGCGACG
GTGGTGAGTAGGTGTATGATCTCTATANACGNCCTCGACACGACAGAACG
CACACAGCGCTAGTTATTATGTAGAGTTTATATGTGATAGAGACTAGTAT
TCAGCATAGATGCGCGGAACCGTCANACACTCTGACCGCATGTACCTCTG
TAATGNCTCTATCGAGCNATGAGAGNCCANCTGAAGATTATAGAGTTACG
CCACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_c10.b1 MSMg01no508_c10.b1 CHROMAT_FILE:
MSMg01no508_c10.b1 PHD_FILE: MSMg01no508_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:57 2005
         (571 letters)



>mm_chr16_23430151_23431121
          Length = 971

 Score =  975 bits (504), Expect = 0.0
 Identities = 549/564 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcattcttcttctataaaatgctctgggtacattaagtgagccctctctgcccata 65
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 769 gaattcattcttcatctataaaatgctctgggtacattaagtgagccctctctgcctata 710

                                                                       
Query: 66  ctttgtggaagtccaatagcaaatctgaattttgcaggctaagagatacagaagcctgtc 125
           || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 709 ctgtgtggaagtccaatagcaaatctgaattttgcaggctaatagatacagaagcctgtc 650

                                                                       
Query: 126 aacactgaacaggctagcactggcccagagcaaatgcattcccacgtcctggaagtggag 185
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 649 aacactgaacaggctagcactggcccagagctaatgcattcccacgtcctggaagtggag 590

                                                                       
Query: 186 gcactgtgagatcaacatgacccaccttcccccaggggccagaatctcccactgactgag 245
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 589 gcactgtgagaacaacatgacccaccttcccccaggggccagaatctcccactgactaag 530

                                                                       
Query: 246 gccagcagggattcacaagtcagtgaccaagtctgagttagccacaaatcctgcccaccc 305
           |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||
Sbjct: 529 gccagcagggattcacaagtcagtgaccaagtccaagttagccacaaatccttcccaccc 470

                                                                       
Query: 306 taccctacgagaacctccgggaagcagcaccctcctaccatctgatccaggcgccccatg 365
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taccctacaagaacctctgggaagcagcaccctcctaccatctgatccaggcgccccatg 410

                                                                       
Query: 366 ttttcattttagccattgggtttattcacatatttaacagctatttccctcactcaggcc 425
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 409 ttttcattttagccattgggtttattcacatatttagcagctatttccctcactcaggcc 350

                                                                       
Query: 426 atgtcagaactgtaggggccacagaaatcacctatcgttcattttggttcaagacacggc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 atgtcagaactgtaggggccacagaaatcacctatcgttcattttggttcaagacacagc 290

                                                                       
Query: 486 ataagagcccttggtgtacacacatttatttactgagagtcagaatcagcgtccagcaat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ataagagcccttggtgtacacacatttatttactgagagtcagaatcagcgtccagcaat 230

                                   
Query: 546 gctggcaggagacaacttgagaat 569
           ||||||||||||| ||||||||||
Sbjct: 229 gctggcaggagacgacttgagaat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)