Query= MSMg01no509_k16.b1 MSMg01no509_k16.b1 CHROMAT_FILE:
MSMg01no509_k16.b1 PHD_FILE: MSMg01no509_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:58 2005
(711 letters)
>mm_chr16_69637077_69638186
Length = 1110
Score = 1299 bits (672), Expect = 0.0
Identities = 699/708 (98%), Gaps = 1/708 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctattttgactgttgtagctttgactaatctctaatgtcctcagagaaggtag 63
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ggaattcctatgctgactgttgtagctttgactaatctctaatgtcctcagagaaggtag 851
Query: 64 tattgattatatgcatatgatcctgggaatgttgtagcaaacttacaccaagtagaattt 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 tcttgattatatgcatatgatcctgggaatgttgtagcaaacttacaccaagtagaattt 791
Query: 124 taagtaagataattctattgtgttatgtttctaaggtctgtttgatttctcctaaaaaat 183
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 790 taagtaagataattctattgtgttatgtttctaaggtctgtttgatttcttctaaaaaat 731
Query: 184 aattgtgaggatgaatatttctgcacatgtctctaacttctcactacttactaaaatata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aattgtgaggatgaatatttctgcacatgtctctaacttctcactacttactaaaatata 671
Query: 244 tggtggttttttttcatttgtcgaaatataatccatttccttcatgtatctctgttcctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tggtggttttttttcatttgtcgaaatataatccatttccttcatgtatctctgttcctt 611
Query: 304 tgttcaatttatttttttctagaaagaaatagtcaatctattgattgccgacctatccat 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 610 tgttcaatttatttttttctagaaagacatagtcaatctattgattgccgacctatccat 551
Query: 364 ttaatcagactttgtaaattgctcctgtttgtgaataaagtacatcgtgagaattagagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaatcagactttgtaaattgctcctgtttgtgaataaagtacatcgtgagaattagagc 491
Query: 424 tattactttaacattagcagaacataaaatgtaatcaatagcatattcctgaagggatgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 tattactttaacattagcagaacataaaatgtaatcaatagcatattcctgaaaggatgc 431
Query: 484 ataatttctgtaatggagataaattcagggcactgggctattaaagatgggcaataccaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ataatttctgtaatggagataaattcagggcactgggctattaaagatgggcaataccaa 371
Query: 544 tggttagtatgtgtaggattcataatacttttcgaaacataaggaaagtgttgacacggc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tggttagtatgtgtaggattcataatacttttcgaaacataaggaaagtgttgacacggc 311
Query: 604 tacagtttagtaatggggaagcagataaactcacacatgaggcccatgtaacaactctgt 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tacagtttggtaatggggaagcagataaactcacacatgaggcccatgtaacaactctgt 251
Query: 664 gacagtataggacatcaagtctgaatttttcttatatctgaataagaa 711
||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 250 gacagtatagggcatcaagtctgaatttt-cttatatctgaataagaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1110
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1100
Effective search space: 771100
Effective search space used: 771100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no509_k16.g1 MSMg01no509_k16.g1 CHROMAT_FILE:
MSMg01no509_k16.g1 PHD_FILE: MSMg01no509_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:58 2005
(613 letters)
>mm_chr16_69491116_69492128
Length = 1013
Score = 1178 bits (609), Expect = 0.0
Identities = 612/613 (99%)
Strand = Plus / Plus
Query: 1 attctttgttcagttctgagccccattttttaatgggacatctttggtttcttcttaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttgttcagttctgagccccattttttaatgggacatctttggtttcttcttaaga 260
Query: 61 agacagccaaaccctaaatttgggaatactatgtgaattttttaaaagagaatataattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagccaaaccctaaatttgggaatactatgtgaattttttaaaagagaatataattg 320
Query: 121 tgcaaacaactacataaacacatattcttttttagcaactcattttctaatttttaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaaacaactacataaacacatattcttttttagcaactcattttctaatttttaaaag 380
Query: 181 actttgaaaggttgaagtttgaagactttcaagtatttctcattaatatgtaccagtggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttgaaaggttgaagtttgaagactttcaagtatttctcattaatatgtaccagtggg 440
Query: 241 agatattgttttaacaataaacatgttaattgggcttagctgacagttgagagagaaact 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatattgtcttaacaataaacatgttaattgggcttagctgacagttgagagagaaact 500
Query: 301 tatataataggggtcacagacttcaaagcctacaggggccatgctgttaacataaatgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatataataggggtcacagacttcaaagcctacaggggccatgctgttaacataaatgaa 560
Query: 361 gaaacaacctcaatccaagaacagtgaagccaaggctgcaagagcctttgtgaactgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaacaacctcaatccaagaacagtgaagccaaggctgcaagagcctttgtgaactgggg 620
Query: 421 accacataacctttctagagggccaacttgtattcagcccttgccaatcattgccacatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accacataacctttctagagggccaacttgtattcagcccttgccaatcattgccacatg 680
Query: 481 ggaagacaaagttaacagtactggagttcctaactgcttctcagaaatgctgaaaatata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagacaaagttaacagtactggagttcctaactgcttctcagaaatgctgaaaatata 740
Query: 541 gattaagatgtttatatgggttgatggctttttgtaagacaagcatgaggcaaaatgttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattaagatgtttatatgggttgatggctttttgtaagacaagcatgaggcaaaatgttc 800
Query: 601 aagggttgtagaa 613
|||||||||||||
Sbjct: 801 aagggttgtagaa 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
