BAC Information

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BAC

Clone NameMSMg01-511G14
Chromosome16 (Build37)
Map Location 65,494,483 - 65,494,939
singlet/doubletsinglet
Overlap genenone
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511G14.T7 (MSMg01no511_g14.b1)MSMg01-511G14.TJ (MSMg01no511_g14.g1)
ACCAG584613AG584614
length708722
length of high quality
(start - end)
461 (48 - 508)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no511_g14.b1 PHD_FILE: MSMg01no511_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:16 2005CHROMAT_FILE: MSMg01no511_g14.g1 PHD_FILE: MSMg01no511_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATGGTTGCCCTCGAGGTTCAAATACTATGTTGATGGTAAATG
TCCTAGCAATCCATGAGGTTAAAAATCCTAGAATCATCCTTCCCATTCTA
CGGACATGGGCTAGTAAGTTTGGAGTGAGCTATGATGGCGCTCTCCCTCT
TGTTTTGTTCAATACTCTGTTGCATAAGTTTACTGCTCTTCCGGTAGCTT
CGTATCGTCTCCGATGCTATCTATTCCAAGGGCAAACTTAAACTGTGGCG
GAGAAGCCTCCCTTGTATACGCACAGGACCACAATGAAGGAGGTGGGGGC
GAGGGGGCTTTCCCCTTGTTTTTCATTTAGGCTTTAAGGGATTTTTGCCC
TGATGCTTTTTGGATCTCCACACCTTTGAATCCGTGTCACGTGGTTTCTT
CTGCCTCCCACAATCGGTATACCCCCGAGTTCTCACTACTTTTCCCCACA
GCAGTTCCCAGCTGACCTTACTCTGTGTAACATTATTCTAACCATAAATC
TTGTCGACTTCTATAGCCACATAGACTCCTAATCCACCTTCTGAACTCCC
ACACTGGTGGATCAATACAAGTTAAACCACCACCAATAACTATGAATATG
TGTTTGCCCTTTATGCTGTCTGATGTGTCACAATTCAACGTCGATTTTAC
TTTAGGCC
ATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTG
TTTTACGGGAACACTTCATTACCATGACCCGCAGTTCTGGTTCCGGAATG
AGGGATCTTCCTTGCACCGGTGATGGTAACCGTCCTGGGTTTTCTCATCC
CAGGATTTCTCGTCCCGGGTTTTCTCGTCCCAGGATTTCTCGTCCCGGGT
TTTCTCGTCCCGGGTTTCAGCACCAACTCTTACACGCATTCTCGCGACCG
GCCAGGAAGAACACAGCAAACCGGAATCTTCTGCGGCAAAACTTTATTGC
TTACATCTTCAGGAGCAAGAGTGCTAGATAGCAAGAGCTCTATTGCTTAC
ATCCTTAGGAGCCAGAGTGTTTGAGCACAATTAGAGCTAGAGCCAGATTT
TGAGAGCAAAAGGGGAGAATGGCTAAACCCCGTCCCTTTTTAAGGAGAAT
TATTCTCCGCCTAGGATGTATTACTCCCTGATTGGCTGCAGCCCATCGGC
CGAGTTGTCGTCACGGGGAATGCTTATCACATGTATTGTAAAACTACCCT
TGGCACATGCGCACATTATTTGTCTATCACTTATTAAACTTGATGTCAGT
GCCATCTTGTAACAGCGAATGTGATGGCGGTTCCCCCATCCCCTTCTATT
TCACCAATCGTCTTTTGTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_g14.b1 MSMg01no511_g14.b1 CHROMAT_FILE:
MSMg01no511_g14.b1 PHD_FILE: MSMg01no511_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:16 2005
         (461 letters)



>mm_chr16_65494279_65495139
          Length = 861

 Score =  729 bits (377), Expect = 0.0
 Identities = 437/457 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatggttgccctcgaggttcaaatactatgttgatggtaaatgtcctagcaatc 64
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 661 gaattctatggttggcctcgaggttcaaaaactatgttgatggtaaatgtcctagcaatc 602

                                                                       
Query: 65  catgaggttaaaaatcctagaatcatccttcccattctacggacatgggctagtaagttt 124
           |||||||  |||||| |||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 601 catgaggcaaaaaattctagaatcatccttcccattctaaagacatgggctagtaagttt 542

                                                                       
Query: 125 ggagtgagctatgatggcgctctccctcttgttttgttcaatactctgttgcataagttt 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 ggagtgagctatgatggcgctctcccccttgttttgttcaatactctgttgcataagttt 482

                                                                       
Query: 185 actgctcttccggtagcttcgtatcgtctccgatgctatctattccaagggcaaacttaa 244
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 481 actgctcttccggtagcttcgtatcatctccgatgctatctattccaagggcgaacttaa 422

                                                                       
Query: 245 actgtggcggagaagcctcccttgtatacgcacaggaccacaatgaaggaggtgggggcg 304
           ||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||
Sbjct: 421 actgtggtggagaagcctcccatgtatacgcacaggaccgcaaggaaggaggtgggggcg 362

                                                                       
Query: 305 agggggctttccccttgtttttcatttaggctttaagggatttttgccctgatgcttttt 364
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 361 aggggactttccccttgtttttcatttaggctttaaggcatttttgccctgatgcttttt 302

                                                                       
Query: 365 ggatctccacacctttgaatccgtgtcacgtggtttcttctgcctcccacaatcggtata 424
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 301 ggatctccacacctttgaatccgcgtcacgtggtttcttctgcctcccacaatcggtaga 242

                                                
Query: 425 cccccgagttctcactacttttccccacagcagttcc 461
           ||||||||||||||||||| ||||||||||| |||||
Sbjct: 241 cccccgagttctcactactcttccccacagccgttcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)