Query= MSMg01no511_k21.b1 MSMg01no511_k21.b1 CHROMAT_FILE:
MSMg01no511_k21.b1 PHD_FILE: MSMg01no511_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:37 2005
(481 letters)
>mm_chr16_29883752_29884632
Length = 881
Score = 733 bits (379), Expect = 0.0
Identities = 425/449 (94%), Gaps = 16/449 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgactgttccc--ggttatgggggagggtgtactatggcaaatgaagtgtagt 62
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaattcctgactg--cacagggttatgggggagggtgtactatggcaaatgaagtgtagt 250
Query: 63 ggtgtgtgtgtgt------------gcacatgtgtgcatctctgtgtgtatatgtttgtg 110
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 251 ggtgtgtgtgtgtgtgtgtgtgtgcgcacatgtgtgcatctctgtgtgggtatgtttgtg 310
Query: 111 tgtgtgatcacacagatacaagtaggttcaaagtcggcaggatctgaagactgagaattc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtgatcacacagatacaagtaggttcaaagtcggcaggatctgaagactgagaattc 370
Query: 171 agtgcaaattcctctcttttaaataggtggtactgagggctcttttcaacctgagagact 230
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtgcaaattcctctcctttaaataggtggtactgagggctcttttcaacctgagagact 430
Query: 231 acaaaggtacctgacccatgagatgccttgatggtttctctctcgctgcggcatccatct 290
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 acaaaggtacctgacccgtgagatgccttgatggtttctctctcgctgtggcatccatct 490
Query: 291 ccatgagcttgtctatgtggcttgtctatacggctcacatagccagccatcttgactaag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ccatgagcttgtctatgtggcttgtctatacggctcacatagccagccatcttgactaag 550
Query: 351 ctaagactttcttttcttttttctgtcttccttccttccttccttccttccttccttcct 410
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctaaggctttcttttcttttttctgtcttccttccttccttccttccttccttccttcct 610
Query: 411 tccttccttccttccttccttccttcctt 439
||||||||||||||| |||||||||||||
Sbjct: 611 tccttccttccttccctccttccttcctt 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_k21.g1 MSMg01no511_k21.g1 CHROMAT_FILE:
MSMg01no511_k21.g1 PHD_FILE: MSMg01no511_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:37 2005
(602 letters)
>mm_chr16_30023372_30024373
Length = 1002
Score = 1149 bits (594), Expect = 0.0
Identities = 600/602 (99%)
Strand = Plus / Minus
Query: 1 tccctgaacacgtagacccttcgagaaaaatggttcccttcccattagctctttactggg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 802 tccctgaacacgtagacccttcgaaaaaaatggttcccttcccattagctctttactggg 743
Query: 61 atttgtgacatcccatagtctgtcaaggatgggaaggacaccatgtgacatgggtgctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atttgtgacatcccatagtctgtcaaggatgggaaggacaccatgtgacatgggtgctcg 683
Query: 121 attgctgaataggttgctatcccaggcaagcccatcttactcttaaaactgaaactgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attgctgaataggttgctatcccaggcaagcccatcttactcttaaaactgaaactgctc 623
Query: 181 ttgctctgtctccagtcactcacaggacggagcctggagagtgcaaacctcatcaggtat 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgccctgtctccagtcactcacaggacggagcctggagagtgcaaacctcatcaggtat 563
Query: 241 gagcagatctgtggctccatcagcgtcccgccccaaacatgaagactgcaatagtattgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gagcagatctgtggctccatcagcgtcccgccccaaacatgaagactgcaatagtattgc 503
Query: 301 agaaaccgtcccataagaaagaaatcttcgtgattcaggacaaggcatcctgcttgggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaaaccgtcccataagaaagaaatcttcgtgattcaggacaaggcatcctgcttgggct 443
Query: 361 ttctcttgggctatccccacagactgactttatatgttcggagtagacaaaggagactct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttctcttgggctatccccacagactgactttatatgttcggagtagacaaaggagactct 383
Query: 421 agccaggaggtagggaagcaggcctctactgaacgggaagtgaaaaacgagaagcctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agccaggaggtagggaagcaggcctctactgaacgggaagtgaaaaacgagaagcctagg 323
Query: 481 gctcagtataaggtgtcctgaagaatgacacccccatctgagccttgggtctgggcaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctcagtataaggtgtcctgaagaatgacacccccatctgagccttgggtctgggcaact 263
Query: 541 gcctcttctgcttcctgtcccccaccattctgaggaaccgaaccaacatgtgtgttttct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcctcttctgcttcctgtcccccaccattctgaggaaccgaaccaacatgtgtgttttct 203
Query: 601 ga 602
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
