Query= MSMg01no511_l18.b1 MSMg01no511_l18.b1 CHROMAT_FILE:
MSMg01no511_l18.b1 PHD_FILE: MSMg01no511_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:41 2005
(482 letters)
>mm_chr16_93081478_93082362
Length = 885
Score = 791 bits (409), Expect = 0.0
Identities = 468/501 (93%), Gaps = 27/501 (5%)
Strand = Plus / Plus
Query: 4 ggaattcatagctgtctc-catcccgagccttcccgttcagtcacaagacattacaagag 62
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagctg-ctaacatcccgagccttcccgttcagtcacaagacattacaagag 262
Query: 63 cagaacgaagagctctgcatagatttcctcactcctggtgaacagagctgtctctgagga 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagaatgaagagctctgcatagatttcctcactcctggtgaacagagctgtctctgagga 322
Query: 123 agagcgttcgatccaatgctcaccatgcacttgggcagctgcctagaatgtctctcaaaa 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaacgttcgatccaatgctcaccatgcacttgggcagctgcctagaatgtctctcaaaa 382
Query: 183 gact--aagcatttaatagtgtctccatgaagcccaaactaggagttccagttataaata 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gactttaagcatttaatagtgtctccatgaagcccaaactaggagttccagttataaata 442
Query: 241 tggagggccctgtgctcttaggggtagacttagtgatcagtaagagtttccataaaa-gt 299
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 443 tggagggccctgtgctcttaggggtagacttagtaatcagtaagagtttccataaaaagt 502
Query: 300 gtcacttcttctttttaaaaatgtgtgtgtgtg----------------agtgtgtgtgt 343
||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 503 gtcacttctcctttttaaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgt 562
Query: 344 gtgtgt----atgggtatgcacatgtgtgtatgcatatgtgtgtgtacccatgcatgcat 399
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 gtgtgtgtgtatgggtatgcacatgtgtgtatgcatatgtgtgtgtatccatgcatgcat 622
Query: 400 gtgtatgtgtgtgagtgtgtatgcttgtttgtatgtgtgtgtgcatgtgtgtgtgtgttt 459
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 623 gtgtatgtgtgtgagtgtgtatgcttgtttgtatgtgtgtgtgcatgtgtgtgtgt--tt 680
Query: 460 gtttatgtgtgagtgtgtatg 480
|||||||||||||||||||||
Sbjct: 681 gtttatgtgtgagtgtgtatg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 885
Length adjustment: 10
Effective length of query: 472
Effective length of database: 875
Effective search space: 413000
Effective search space used: 413000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_l18.g1 MSMg01no511_l18.g1 CHROMAT_FILE:
MSMg01no511_l18.g1 PHD_FILE: MSMg01no511_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:41 2005
(533 letters)
>mm_chr16_93208453_93209383
Length = 931
Score = 965 bits (499), Expect = 0.0
Identities = 524/533 (98%), Gaps = 2/533 (0%)
Strand = Plus / Minus
Query: 1 atttgcaagagacacaagatctaagatgacgggtctctagagtgggcatgtccaggcagt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 731 atttgcaagagacacaagatctaagatgacgggtctctagagtgggcgtgtccaggcagt 672
Query: 61 gtgcctttggggccccaccttcagagcccacgccatgttgtctgcaagcgtataccattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtgcctttggggccccaccttcagagcccacgccatgttgtctgcaagcgtataccattt 612
Query: 121 gcaagttcatctttagtgatgtctttggccctcagtgtggcctgtctcctttggaatgag 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 611 gcaagttcatctttagtgatgtcttcggccctcagtgtggcctgtctcctttggaatgag 552
Query: 181 gctttctaggacaccaaagttaaaattttgttttgccacattttcacaaagacatgtgcc 240
| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 551 g--ttctaggagaccaaagttaaatttttgttttgccacattttcacaaagacatgtgcc 494
Query: 241 tggtagaaatccttgtactctttgcttctgaggtttcacaatgtctccaaggagggcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggtagaaatccttgtactctttgcttctgaggtttcacaatgtctccaaggagggcttt 434
Query: 301 gtggattcttgggagcggaataaagagcctgacggatgtgtgggcagtttgtattggaag 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtggatccttgggagcggaataaagagcctgacggatgtgtgggcagtttgtattggaag 374
Query: 361 gagttagtctggcctggtagtgattagatgatagactaggctttgcctggcttgcatgga 420
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagttagtctggcctgttggtgattagatgatagactaggctttgcctggcttgcatgga 314
Query: 421 ttgtaattcccatttcagcctgtccacccatggtggaggtagacagagatgtttctcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgtaattcccatttcagcctgtccacccatggtggaggtagacagagatgtttctcaca 254
Query: 481 ttctgggaggagtgtacccgaagctggagtagaatcttggctttcctctccca 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttctgggaggagtgtacccgaagctggagtagaatcttggctttcctctccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 931
Length adjustment: 10
Effective length of query: 523
Effective length of database: 921
Effective search space: 481683
Effective search space used: 481683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
