BAC Information

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BAC

Clone NameMSMg01-511N24
Chromosome16 (Build37)
Map Location 65,743,015 - 65,918,314
singlet/doubletdoublet
Overlap geneEG383186, Vgll3, LOC664846
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931, Pou1f1, Chmp2b
Downstream geneLOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511N24.T7 (MSMg01no511_n24.b1)MSMg01-511N24.TJ (MSMg01no511_n24.g1)
ACCAG584967AG584968
length783769
length of high quality
(start - end)		247 (71 - 317)480 (79 - 558)
definitionCHROMAT_FILE: MSMg01no511_n24.b1 PHD_FILE: MSMg01no511_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:51 2005CHROMAT_FILE: MSMg01no511_n24.g1 PHD_FILE: MSMg01no511_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,918,068 - 65,918,314)(65,743,015 - 65,743,494)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCATAGCATTTCTTTTCCATCAAGAAGCATAACAAATCATGCTGGACA
TGTGCAGTAATAGGATCCAAACGTGTTTTCACACCCAAGACTAAAGTCAT
GATTCTGAGAAGCACATTAATTGACATTGTCACAGTATTCTTGCTGCTGT
ATAGTCCTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTTNCACTTTATCCTTCTCATCCCTTCTGGATTTATACTAAAGT
TCTTTTGCATTTTTTAATTTTTTTTTTTGTGGATTGTGTGACTTGAAGAT
GACAGATTTATTTGTTATACGCTTACATGGCACTTGGCCCTGTCATATTA
TGCTGTGTGAATTGTATGCCCTTATTTCCGCTTTCTCAATTCTCCCGCTT
TTTTTTTTTTGATTATTTTTCCCACCATCTTCCGATTTTTTATTGCATTT
AAACTTTTCTTCCTTTATTTTTTTTCCTTTTCAACACCCCATTCTACCCC
GTTTTTCTTTTTTTTTTACTTTTCCCCCCAGCCCAATTATCTTTCTATCC
TGTGTCTTTTCATACCTATCTCTTTACTCCCTAATTTATTCGCTTCCCCC
TTTTTCCCAATTCTCCTTTTTTTTTTTTTTCTTCCTCAAAACATTTTATA
TCATTATCTGTCTTCGCAACTTTCTTTTTACTTCTCCGATTTATACGCAT
TTTCTTCGCTCCCCCCCCTATACTTTTTACCAC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAACTTCTGTCTGATAGA
AAAACATGGACTGACAGGTAAGAACATTTTCCTTGTTTCCAGAAAATGCT
CGCATTGGAAGACACCAATGAAGTATAGCTAAGGCACATCTTTTAATTTA
TTTTATTTTGAGAAGGATATCCCACAGCTAGTATTGGCCATCTGAAGTTT
GGATTTTGACAAGAAAACAAGTTGCTAACTATTAAGATCAGCCAGATAAG
ACTCTCAGTTCTTGGTCTACTTCTAGGAGGTAACGAAACCCAATTCTAAA
CATGTAAATTATTTATTTTAGCAGAAAAGATGGCCTGGGGGGTTCCTGGC
CTTTGTTTAACTTCCTCACCCTACTTGCCCAATTCCAGATGTGCATGCAG
GAAAGATTGTGAGCATGGAAAGTTACTGCATGTGTGACCACATTCTTGCT
AAATGCCACTGAGTGAGCTGTTGGCTGAAGGAAGGACTGGTACTGGAATG
TGGGAGAGAGTGTTAGAGAGGAAATACAGAATGCTGGTGGAAAGAATGCT
ACTTTGAGTACAAAGAAATCTCTGACTGACTCTGAACTTAGGGCCTGGAG
GCTGGGAAAGCAGGAGACAGTCATGAAGCTTTGTTTTACATATGTATATT
ATGTATATGTATACACGGCGGGAAATATTATTTATATTTTATATTATCCA
CTTTATAATTAAATAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_n24.b1 MSMg01no511_n24.b1 CHROMAT_FILE:
MSMg01no511_n24.b1 PHD_FILE: MSMg01no511_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:51 2005
         (247 letters)



>mm_chr16_65917975_65918621
          Length = 647

 Score =  456 bits (236), Expect = e-133
 Identities = 244/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaagaagcataacaaatcatgctggacatgtgcagtaataggatccaaacgtgttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atcaagaagcataacaaatcatgctggacatgtgcagtaataggatccaaacgtgttttc 281

                                                                       
Query: 61  acacccaagactaaagtcatgattctgagaagcacattaattgacattgtcacagtattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acacccaagactaaagtcatgattctgagaagcacattaattgacattgtcacagtattc 221

                                                                       
Query: 121 ttgctgctgtatagtcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttgctgctgtatagtcctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 161

                                                                       
Query: 181 gtgtgtgttncactttatccttctcatcccttctggatttatactaaagttcttttgcat 240
           ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 160 gtgtgtgttgcactttatccttctcagcccttctggatttagactaaagttcttttgcat 101

                  
Query: 241 tttttaa 247
           |||||||
Sbjct: 100 tttttaa 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no511_n24.g1 MSMg01no511_n24.g1 CHROMAT_FILE:
MSMg01no511_n24.g1 PHD_FILE: MSMg01no511_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:51 2005
         (480 letters)



>mm_chr16_65742815_65743694
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagaacttctgtctgatagaaaaacatggactgacaggtaagaacattttccttgttt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagaacttctatctgatagaaaaacatggactgacaggtaagaacattttccttgttt 260

                                                                       
Query: 61  ccagaaaatgctcgcattggaagacaccaatgaagtatagctaaggcacatcttttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagaaaatgctcgcattggaagacaccaatgaagtatagctaaggcacatcttttaatt 320

                                                                       
Query: 121 tattttattttgagaaggatatcccacagctagtattggccatctgaagtttggattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttattttgagaaggatatcccacagctagtattggccatctgaagtttggattttg 380

                                                                       
Query: 181 acaagaaaacaagttgctaactattaagatcagccagataagactctcagttcttggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagaaaacaagttgctaactattaagatcagccagataagactctcagttcttggtct 440

                                                                       
Query: 241 acttctaggaggtaacgaaacccaattctaaacatgtaaattatttattttagcagaaaa 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttctaggaggtaacaaaacccaattctaaacatgtaaattatttattttagcagaaaa 500

                                                                       
Query: 301 gatggcctggggggttcctggcctttgtttaacttcctcaccctacttgcccaattccag 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatggcctggggggttcctggcttttgtttaacttcctcaccctacttgcccaattccag 560

                                                                       
Query: 361 atgtgcatgcaggaaagattgtgagcatggaaagttactgcatgtgtgaccacattcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgcatgcaggaaagattgtgagcatggaaagttactgcatgtgtgaccacattcttg 620

                                                                       
Query: 421 ctaaatgccactgagtgagctgttggctgaaggaaggactggtactggaatgtgggagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaatgccactgagtgagctgttggctgaaggaaggactggtactggaatgtgggagag 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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