BAC Information

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BAC

Clone NameMSMg01-511P04
Chromosome16 (Build37)
Map Location 34,864,257 - 34,864,835
singlet/doubletsinglet
Overlap geneMylk
Upstream geneItgb5, Umps, Kalrn, LOC100043670, Ropn1, Ccdc14
Downstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511P04.T7 (MSMg01no511_p04.b1)MSMg01-511P04.TJ (MSMg01no511_p04.g1)
ACCAG585023AG585024
length732731
length of high quality
(start - end)
584 (44 - 627)636 (73 - 708)
definitionCHROMAT_FILE: MSMg01no511_p04.b1 PHD_FILE: MSMg01no511_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:56 2005CHROMAT_FILE: MSMg01no511_p04.g1 PHD_FILE: MSMg01no511_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTCATATGCCAGGAGGCTAGAGTCAGGCATGGTGGTGTGCACCTG
TAATCCCAGCACGTGGTAGACCACGGCAGGAGGATTAAGAGCAAGGCTAT
CTTAGGCTATATATCAAGATCCTAACTCAAAAACAATCACCTGCAGAGCT
TCTGGAAGCACTATCTGACCTGTAGCAGCCTGCCCCTCTGTCTTCTTCCA
GCCCCTCCATAATCTCCTCTTCCCCCAGTCCCTGACCCCTAGTGTCTTAA
TCAGGGTTTCTATTCCTGCACAAACATCATGACTAAGAAACAAGTTGGGG
AGGAAAGGGTTTACTCAGCTTACACTTCCACATGGCAGTTCATCACCAAA
GGAAGTCAGGACTGCAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAG
AGGCCATGGAGGGATGTTACTTACTGGCTTGCTTCCTCTGCCTTGCTCAG
CTTGCTTCCTTATAGAACTCAAGACTACCAGCTCATGGATGGTATCATCC
ACAATGGGCTCTCCCACCCTTTATCACTAACTGAGAAAATGCCTTACAGC
TGGATCTCATGGAGGCATTTCCTCACCTATAGCTCCTTTCTCTGTGATCC
AGCTTGTGTCAAGTTGACACAAAACCAACCAGTACACCTAGTAATACTGA
GGCTGCTGCTCTCTGCACATCCCTGTATCTTC
ATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGTTATCCCCACCTAGCTTCAAATGAA
TGAGACTTAAACAATGATTTATTTACTAGGCTCTGCATGATTACTGGGCA
ATTACCCCTAATCTAATTCTCTAACGCCAGAATGGCTACTCTCCCCAACT
GCGGCTCCCTAAATACTTGTTTGAATCTTTCTGGGTTACCTCTGCTCCAG
CAGTCTGCTCTTCTGGGGAGCATTTCAATCTAGCACCCCGGCACATGCCA
CCAGTCCATCATGATTAATGAAGTCCTCCTGCCTCTCTATCCTCTGTGCT
CCTTCTCTCTCTCCTTACTTCTTCTCCTGTGGACCCTCCCTGCCACCCCC
AACCAAGTAACTCAAACTCCACTTCTCTCTATTCTGCCCAATAATTGGTT
GTAACCCTTTTTATTTAACCAATGGTTTTAAATTGGGGAATAAGGTTTGC
ACAACAAAGGTTTGTGTAGGAATTTGTTCATTTTTGATCAACCAGATCTT
GGGGTACAGAATTTAGCATTTGAATACACAGCAGCACCAGACCAACCCCC
AACAGCCTTTGGATCAAGACAGAACTCTCAGTTCCTCCAGCACTATCTTT
GCCTGCATGCTGCCATGCTTCCCACTATGATGGTAATCGACTGAAGCTCT
GAAACTGTAAGCCAGCCCCAATTTAATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_p04.b1 MSMg01no511_p04.b1 CHROMAT_FILE:
MSMg01no511_p04.b1 PHD_FILE: MSMg01no511_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:56 2005
         (584 letters)



>mm_chr16_34864053_34865036
          Length = 984

 Score =  990 bits (512), Expect = 0.0
 Identities = 563/580 (97%), Gaps = 1/580 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacctcatatgccaggaggctagagtcaggcatggtggtgtgcacctgtaatcc 63
           |||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaactcacatgg-aggaggctagagtcaggcatggtggtgtgcacctgtaatcc 263

                                                                       
Query: 64  cagcacgtggtagaccacggcaggaggattaagagcaaggctatcttaggctatatatca 123
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 264 cagcacgtggtagaccacggcaggaggattaagtgcaaggctagcttaggctatatatca 323

                                                                       
Query: 124 agatcctaactcaaaaacaatcacctgcagagcttctggaagcactatctgacctgtagc 183
           |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct: 324 agatcctaactcaaaaacaatcacctgcagggcttctggaagcactagctgacctggagc 383

                                                                       
Query: 184 agcctgcccctctgtcttcttccagcccctccataatctcctcttcccccagtccctgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcctgcccctctgtcttcttccagcccctccataatctcctcttcccccagtccctgac 443

                                                                       
Query: 244 ccctagtgtcttaatcagggtttctattcctgcacaaacatcatgactaagaaacaagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ccctagtgtcttaatcagggtttctattcctgcacaaacatcatgaccaagaaacaagtt 503

                                                                       
Query: 304 ggggaggaaagggtttactcagcttacacttccacatggcagttcatcaccaaaggaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggggaggaaagggtttactcagcttacacttccacatggcagttcatcaccaaaggaagt 563

                                                                       
Query: 364 caggactgcaactcaagcaggtcaggaagcaggagctgatgcagaggccatggagggatg 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggactggaactcaagcaggtcaggaagcaggagctgatgcagaggccatggagggatg 623

                                                                       
Query: 424 ttacttactggcttgcttcctctgccttgctcagcttgcttccttatagaactcaagact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 ttacttactggcttgcttcctctgccttgctcagcttgcttccttatagaaatcaagact 683

                                                                       
Query: 484 accagctcatggatggtatcatccacaatgggctctcccaccctttatcactaactgaga 543
           |||||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 accagcccatggatggcaccatccacaatgggctctcccaccctttatcactaattgaga 743

                                                   
Query: 544 aaatgccttacagctggatctcatggaggcatttcctcac 583
           ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 744 aaatgccttacagctggatctcatgaaggcatttcctcac 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)