Query= MSMg01no513_i13.b1 MSMg01no513_i13.b1 CHROMAT_FILE:
MSMg01no513_i13.b1 PHD_FILE: MSMg01no513_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:03 2005
(699 letters)
>mm_chr16_5207228_5208326
Length = 1099
Score = 743 bits (384), Expect = 0.0
Identities = 435/470 (92%), Gaps = 30/470 (6%)
Strand = Plus / Minus
Query: 230 tccatcatcatgctaacagctcacacacttacacacatgacataaaagtaaaacagactg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 tccatcatcatgctaacagctcacacacttacacacatgacataaaagtaaaacagactg 1040
Query: 290 gcagacgagctcaagaccctgagttctaacccctaaccatataaaaaaaaggcatggtgg 349
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1039 gcagacgagctcaagaccctgagttctaacccctaaccatat-aaaaaaaggcatggtgg 981
Query: 350 tacaaaccttcaatttccaggccctgtaaagtggaggtaagaggatcaaggttcccagcc 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 tacaaaccttcaatttccaggccctgtaaagtggaggtaagaggatcaaggtt------- 928
Query: 410 tgggctacaggaacccttaaagggttcccagcctgggctacaggaacccttaaaggttaa 469
|| || ||||||||||||||||||| |||||||||||||
Sbjct: 927 -------caaga---------------ccagcctgggctacaggaaaccttaaaggttaa 890
Query: 470 ttctggcgttcactcaactgagccatacatgatgggctgtcctctctgctgtggtgaatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ttctggcgttcactcaactgagccatacatgatgggctgtcctctctgctgtggtgaatg 830
Query: 530 tacctcaattgtctaggtagctgcggaagcttgaggttgcttttgctaataacactaact 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 829 tacctcaattgtctaggtagctgcggaagcttgaggttgcttttgctaataatactaact 770
Query: 590 ctcctggagcccacgaatatgagggagagctgatgtgaaataattttcccagcatctctg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctcctggagcccacgaatatgagggagagctgatgtgaaataattttcccagcatctctg 710
Query: 650 tctccagatccctacgactcttcactgtcttgcctttgactgggactgca 699
|||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 709 tctccagatccctacgacccttcactgtcttgcctttgactgggattgca 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_i13.g1 MSMg01no513_i13.g1 CHROMAT_FILE:
MSMg01no513_i13.g1 PHD_FILE: MSMg01no513_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:04 2005
(669 letters)
>mm_chr16_5067390_5068458
Length = 1069
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Plus
Query: 1 caggaataaggcagagagtgattgcgaaggacagttgatgtgctcctttggtgtctcgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaataaggcagagagtgattgcgaaggacagttgatgtgctcctttggtgtctcgtg 260
Query: 61 tgcacacacaaatacctacatacacacaaagtacatataaacagagttcaagttcatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacacacaaatacctacatacacacaaagtacatataaacagagttcaagttcatcct 320
Query: 121 tgggttaataaaaccctgtttcagaaaagtaatataatctgcaaacttaaactgttgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggttaataaaaccctgtttcagaaaagtaatataatctgcaaacttaaactgttgctg 380
Query: 181 ccctgatgaacaatgtgacctttgaatatctgtttaaggagtgagattgaattaactaag 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctgatgaacaatgtgacgtttgaatatctgtttaaggagtgagattgaattaactaag 440
Query: 241 gatacttttgggtcttagaactagtagtataaatttaaacaaaacagtaacttgtctggg 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gatacttttgggtcttagaactagtagtataaatttaaacaaaacaataacttgtctggg 500
Query: 301 gagataatgaagtgcttgctacacaagcatgaggacacaaattttgattccccagaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagataatgaagtgcttgctacacaagcatgaggacacaaattttgattccccagaatcc 560
Query: 361 ttggatagtaagccatggtgcctaagaaacaacagctgaggcggtctgctagctaatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggatagtaagccatggtgcctaagaaacaacagctgaggcggtctgctagctaatatt 620
Query: 421 tgtacccgtacacacacatgcacacttgtatacacaccacacaggatccagtttcatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtacccgtacacacacatgcacacttgtatacacaccacacaggatccagtttcatttt 680
Query: 481 cttcctacattaactaaggctgtagctcagtggtacagggcttgaatagcatatatgaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcctacattaactaaggctgtagctcagtggtacagggcttgaatagcatatatgaga 740
Query: 541 ccctatattctctctccagcaatacaagggtgaggggagcaaactaacccaaacacagaa 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctatattctctctccagcaatgcaagggtgaggggagcaaactaacccaaacacagaa 800
Query: 601 acaaaccccaaaatatcaaagtaatagaatcaatcccactgctctagaaaagcaccaaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaaaccccaaaatatcaaagtaatagaatcaatcccactgctctagaaaagcaccaaga 860
Query: 661 ttgaatctg 669
|||||||||
Sbjct: 861 ttgaatctg 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
