BAC Information

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BAC

Clone NameMSMg01-514B03
Chromosome16 (Build37)
Map Location 73,820,452 - 73,820,583
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514B03.T7 (MSMg01no514_b03.b1)MSMg01-514B03.TJ (MSMg01no514_b03.g1)
ACCAG586642AG586643
length1,547721
length of high quality
(start - end)
---552 (75 - 626)
definitionCHROMAT_FILE: MSMg01no514_b03.b1 PHD_FILE: MSMg01no514_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:49 2005CHROMAT_FILE: MSMg01no514_b03.g1 PHD_FILE: MSMg01no514_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAGAGTGGTCCGTCTCCTNCCTCACTNTATGCCGCGATTCACTCATTCT
ACTTCATAGAAGAATACTTAACTTAAGTGTATGCAGTGTACGAGTACATA
CTCTCCCACTACAATTTCGCCGTGCCACGACGTGAATNACGTTACTCTCA
GCGTCAATAGTGTGCCCGGCAGCGCACTCACGGGCGCAGTATATGTTAGT
GTACCTGTCTATATGCAGCTCGTCCTATACACAAGAAGGCCATAGACAGT
CCTCATCCTTTCGGTCCCCCTCTGTATCACTCAATTTATTCGGAATAATT
CTCATCCTCACTTAAATTACTCGATAAGAGAGACAACATACGTCAGGCGC
TCACACTGCGTTCTCAACTATAACCATATCATGTATGAATACAGCTATAT
ATATGTACTTTNCNCATACTATAGTTAACTTCTCGCTGGCCGCCACTATA
TCATGCAGACATATCTCTCACATCTACATCTGATAGTNACTTCTACTCCT
TGATAGCGGCGGTGAGAGATACTCTGTGGTGCGCTGCTACACGCCAACAC
ACACTCCTATCGTTGGCGGACTACTATTATTTGCGCCTCTGAGCTCTTCC
AGCACCTTACATGCTACTCTTTGTGCCGTGTGGTCTCTNCTTTAGTGTAC
CTCACAATATAATATACATAGTCTCACCTCAAAATNGAGTCTCACATATA
TACTCGTTCTCGTGTCGTGTNCACTCTGAGAGTATATCATCTGTATTTCA
TTCTGCTATACGTCGCGCAGTGCGACATCCGCTAATAACACAGTCTCGTA
GTCTCTGCGCGATGATTTATGTACCTCTCACTTACTCTCGCCTATATGAC
CGNCACAGACGCACGTCGGCGTCGACTATCATTATACTCTAGCTAGACCT
ATATTTCTACGTACGCCGACCGGCCTNCAGTATGTCACGCCTTCATCTAT
ATATTGTCGTNATATAGATTATGTATCTNAAATGACGTGTNATGCCGCAT
CACAGCATCATCACGCGCATATTGACTTATCGTGTCGCTGTGCGTNTCTA
TATGTACTCTGTGCTCACACCACGTATCGTCTCGCGCTAGTACGCTCCTG
ACCGTATGACTGATTACTATAGACCTGATTGAGCATCAGTACTGTCCTCA
GTCGCTACATGCGTATACTGTTTCGTCACATCATCATCACGCTACNTCGA
TGATATCTCATTGATAGTCTANCTTGATGTCTCTCGTACAGCTGGAGTTT
TACCGCGTCTCTATTCTAGCACACACATCGTGTATAGCACATACCTATAT
CGCNGTGCTGCTCTCTATACNCANCACTCGGTCTACTCGTGCTCACNTGC
GCGCTNTCTATTTCTATACGCTACTCCGCCCGGCTGTGTCGCANCTCTAC
GCACAGTCTCNGTCTCGTTATGNCAGCCCGACTGCGTCACGTTAATCATA
TACTACCCGCCCACANATCTCTTCNTCTCCTGCTACTCATCGTCGNCTAT
CTTATTACTNATACTGATCGTACATCNTCTCGTTCTCGAGCGCGCGN
NGCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATAT
ATGTTGGATATTAGTCCCCTATCTGATTTAGGGTAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGC
AGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAAATCTCGATCTTACA
GCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATC
TTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTT
TTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGAT
AAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGAAGCA
CAGACATTTGTAAAATATTAAAAACAACTTTGATGATGATTTTCATTTTT
CCCAGCCATGAGCTGATTGGCTATTACCTCCTCTATGTTACTGAAAGTAA
TATAGGAAATTGTACTGAACTGGTTTAGCTTAGACTCTAGTTTTGGACTT
TTGTTGTAATAATGAGTCTTATTCATCAGGTTCAATGTCTTTATTTTAAA
ATTTAACTGTATCTGTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_b03.g1 MSMg01no514_b03.g1 CHROMAT_FILE:
MSMg01no514_b03.g1 PHD_FILE: MSMg01no514_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:49 2005
         (552 letters)



>mm_chr16_73819832_73820783
          Length = 952

 Score =  255 bits (132), Expect = 5e-72
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                       
Query: 421 gaagcacagacatttgtaaaatattaaaaacaactttgatgatgattttcatttttccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagcacagacatttgtaaaatattaaaaacaactttgatgatgattttcatttttccca 680

                                                                       
Query: 481 gccatgagctgattggctattacctcctctatgttactgaaagtaatataggaaattgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatgagctgattggctattacctcctctatgttactgaaagtaatataggaaattgta 740

                       
Query: 541 ctgaactggttt 552
           ||||||||||||
Sbjct: 741 ctgaactggttt 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)