BAC Information

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BAC

Clone NameMSMg01-514H09
Chromosome16 (Build37)
Map Location 64,224,484 - 64,225,017
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514H09.T7 (MSMg01no514_h09.b1)MSMg01-514H09.TJ (MSMg01no514_h09.g1)
ACCAG586940AG586941
length719738
length of high quality
(start - end)		538 (46 - 583)612 (75 - 686)
definitionCHROMAT_FILE: MSMg01no514_h09.b1 PHD_FILE: MSMg01no514_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:22 2005CHROMAT_FILE: MSMg01no514_h09.g1 PHD_FILE: MSMg01no514_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTCTCTGTCCTCCAAGATTGCTATTCCCACCCCAAAGACTGC
TTCATAGTTTGCATTTTTAACAATTAGACTATTTCTTTTTCCTCTGGAGA
GACCTCAAGAGCAGAGGAATAAAAATTAAAACCTGATACAAGTCTGGAAT
GGTAGGAAGCGTCACTGAATAGCTTGCAGGTCAAGACTTAAGGATTTTTG
CCCAGAGTTTGCCACTGTGAATATATTTAAACTTTATAGTTCACACAGTC
TCACTTTCATATATATATAGTTTTTTTATTAATTTAAGATGAACAGAGTT
CAGTAGATTCTTTCATTTTTCTGTGCTTTCTCTCCAATAACTCCACATTT
CTAGAACTTTATTGTTTTTTCTCCCATCCAAAAAAATCTTTGTTTCCATC
TTCCTTTGTAGCAATGCACTGTTTCTATGATGTAGACTTTTAGATACATA
TTGAAGATATCCACGACTATTCTAGATAGTGGGAGACATTCTAGTGGGAA
TTTTGTATCTGGGAACACTTAAATCAGTGATAAATCAAACAAACAACAGA
TGCTGAAGCGAACAGAATTATGCAACTGCAGGAAACCTTCATGTTTTCCA
TAAATTTATTAGAGCCTCATATCAAATGTGTTATGATTTGGTCTTAAACT
GATAGAAACTTTCATTCTT

CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTAGCATTTTCATCGAGATTATAT
TGCATCTATAGATTGCTTTTGGCAGAATGGCTGTTTTCACTGTATTAATT
CTACAAATTCACAAGTAGGGAAGATTTTCCCAACTTCAGATATTTTCTTC
AATGTCTTAAAGACTTTATTTTACGAGTCTTTAGCTTGAGTGGTCAGAGT
TATTCCACAATGTTTTTTGGAAGCTATTAGGAAAAGTACTCTTTCCACGA
CTTCTTTTTTTTAATCTTTGTCATTTATATAGAGAAGGAGGCTACTGACC
TACGTATTTATTTTGTTCCCTGCTAATTTGTTAAAAGTGTCCATCAACTG
TAGACATTTCCTGGTGTACCCTTTAGGGTCTTAGGCTGAAAACCATAAAA
TCTGCAAATTTGATTCTTCACTTCCTATTTACTTCCTATGATCTCCTTCA
GTTGTATAAGTTCTAGCTAGGCACTATGGTAGGAACATGTATGGAGAGAG
TAAATATCCTTGTCTAATTCCTGGTTTTAGTGGGAATGCTTTGCGTTTTC
CTCATTTAGGATAATGCTCTCTCTAGGTTTGCTGTAGACTTGCCTTTCTT
GCGTTGAGATATGTACCTTATATCCCTGTTTTCTCCAGAACTTTATAATG
AAGAAGTGTTGAATTATGTCGAAGGCCTTTTCTGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_h09.b1 MSMg01no514_h09.b1 CHROMAT_FILE:
MSMg01no514_h09.b1 PHD_FILE: MSMg01no514_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:22 2005
         (538 letters)



>mm_chr16_64224281_64225217
          Length = 937

 Score = 1004 bits (519), Expect = 0.0
 Identities = 531/535 (99%), Gaps = 1/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcactctctgtcctccaagattgctattcccaccccaaagactgcttcatagt 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcactcactgtcctccaagattgctattcccaccccaaagactgcttcatagt 263

                                                                       
Query: 64  ttgcatttttaacaattagactatttctttttcctctggagagacctcaagagcagagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgcatttttaacaattagactatttctttttcctctggagagacctcaagagcagagga 323

                                                                       
Query: 124 ataaaaattaaaacctgatacaagtctggaatggtaggaagcgtcactgaatagcttgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataaaaattaaaacctgatacaagtctggaatggtaggaagcgtcactgaatagcttgca 383

                                                                       
Query: 184 ggtcaagacttaaggatttttgcccagagtttgccactgtgaatatatttaaactttata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtcaagacttaaggatttttgcccagagtttgccactgtgaatatatttaaactttata 443

                                                                       
Query: 244 gttcacacagtctcactttcatatatatatagtttttttattaatttaagatgaacagag 303
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 gctcacacagtctcactttcatatatatatagtttttttattgatttaagatgaacagag 503

                                                                       
Query: 304 ttcagtagattctttcatttttctgtgctttctctccaataactccacatttctagaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcagtagattctttcatttttctgtgctttctctccaataactccacatttctagaact 563

                                                                       
Query: 364 ttattgttttttctcccatccaaaaaaatctttgtttccatcttcctttgtagcaatgca 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 ttattgttttttctcccatccaaaaaaatctttgtttccatcttcctt-gtagcaatgca 622

                                                                       
Query: 424 ctgtttctatgatgtagacttttagatacatattgaagatatccacgactattctagata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgtttctatgatgtagacttttagatacatattgaagatatccacgactattctagata 682

                                                                  
Query: 484 gtgggagacattctagtgggaattttgtatctgggaacacttaaatcagtgataa 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtgggagacattctagtgggaattttgtatctgggaacacttaaatcagtgataa 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space:   489456
Effective search space used:   489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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