Query= MSMg01no514_m19.b1 MSMg01no514_m19.b1 CHROMAT_FILE:
MSMg01no514_m19.b1 PHD_FILE: MSMg01no514_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:49 2005
(679 letters)
>mm_chr16_9721516_9722594
Length = 1079
Score = 1286 bits (665), Expect = 0.0
Identities = 671/673 (99%), Gaps = 1/673 (0%)
Strand = Plus / Plus
Query: 7 gaattctggcagcttgtcaggggagagaacaaacttagagacaggtaagctggagtccat 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctggcagcttgtgaggggagagaacaaacttagagacaggtaagctggagtccat 266
Query: 67 ttctgtcacttgctccaaaagtactctgggttatagttgttatcctcctgcctggagatt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttctgtcacttgctccaaaagtactctgggttatagttgttatcctcctgcctggagatt 326
Query: 127 gggtgcacagaaccgctcccagatgcccttcctaccatactgtacaatggtgtttgtccc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggtgcacagaaccgctcccagatgcccttcctaccatactgtacaatggtgtttgtccc 386
Query: 187 actgccagctgagtgttctgcatctccagtgaaatcatgtgcagccttcctcagaaggct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actgccagctgagtgttctgcatctccagtgaaatcatgtgcagccttcctcagaaggct 446
Query: 247 gatgtgaggggctgaggacatggttccgtaagagtgcttgctgtaggagcagcagaacat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatgtgaggggctgaggacatggttccgtaagagtgcttgctgtaggagcagcagaacat 506
Query: 307 tagtttgaatccccaccacactcataaaaaaaaatcggtgtggctatgtgctcagtccaa 366
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 507 tagtttgaatccccaccacactcataaaaaaaa-tcggtgtggctatgtgctcagtccaa 565
Query: 367 tgctgtggggagacaggaatggctgagacttgttggctgtcagtctagctccaagtttag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgctgtggggagacaggaatggctgagacttgttggctgtcagtctagctccaagtttag 625
Query: 427 tgaatgtattgtagggaataagacatgtgtgcatgcgctcatgtgtgtgtgccacacata 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgaatgtattgtagggaataagacatgtgtgcatgcgctcatgtgtgtgtgccacacata 685
Query: 487 cacaccacacaaatatacacaatagaaaggctgatatatcctcctattactcagagaatc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cacaccacacaaatatacacaatagaaaggctgatatatcctcctattactcagagaatc 745
Query: 547 aaatctgtatgtccttagcttttccaacctcatttgccctatccgtccgtcctttctata 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aaatctgtatgtccttagcttttccaacctcatttgccctatccgtccgtcctttctata 805
Query: 607 ccatgcatcaaaacaaacccctgacgttctgacaggcactgtggtccctggttcgcagct 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ccatgcatcaaaacaaacccctgacgttctgacaggcactgtggtccctggttcgcagct 865
Query: 667 cttcttcctacac 679
|||||||||||||
Sbjct: 866 cttcttcctacac 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_m19.g1 MSMg01no514_m19.g1 CHROMAT_FILE:
MSMg01no514_m19.g1 PHD_FILE: MSMg01no514_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:50 2005
(625 letters)
>mm_chr16_9886119_9887146
Length = 1028
Score = 1065 bits (551), Expect = 0.0
Identities = 577/587 (98%), Gaps = 4/587 (0%)
Strand = Plus / Minus
Query: 1 tctgcttctgcagcagcttgaggaccgttgcaaaatgacagatcagtgtgactc---gaa 57
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 587 tctgcctctgcagcagcttgaggaccgttgcaaaatgacagatcagtgtgactcgaggaa 528
Query: 58 gcagggcagagcaaccctcaagtcccacagaggcagaagtcccaaaatgctttgcgcatt 117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 527 gcagggcagagcaaccctcaagtcccacagaggcagaaatcccaaaatgctttgcgcatt 468
Query: 118 ctaatcaggaactgctccagggaagaagtgactatatggagttggacactttagctacct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctaatcaggaactgctccagggaagaagtgactatatggagttggacactttagctacct 408
Query: 178 tcctagggagcctaagaagcagctgccccaccatcagcctggctatgtgtagcacaagag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcctagggagcctaagaagcagctgccccaccatcagcctggctatgtgtagcacaagag 348
Query: 238 atacaggcagccatgtggtcagaggcccacccctcctgttgaggctctgtttattacttc 297
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 347 atacaggcagccatgtggtcagaggcccacccctcctgttgaggctctctttattacttc 288
Query: 298 agcccttgtgaacctgggtagtttgtaacgaatgctgtctgttgaaagccgactacctgt 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 287 agcccttgtgaacctgggtagtttgtaatgaatgctgtctgttgaaagccgactacctgt 228
Query: 358 aaactgtagctattaaactgaggccgtagcacttggaaggcttacccggaggattgcctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaactgtagctattaaactgaggccgtagcacttggaaggcttacccggaggattgcctc 168
Query: 418 atgcttgaggccagtctgaacttgatattgaaactttacaaaacaaccagaatacttaca 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atgcttggggccagtctgaacttgatattgaaactttacaaaacaaccagaatacttaca 108
Query: 478 ttgaaagcagagttattttctgagattatcaaagaaaa-gtttaaaatttaaatggatat 536
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 107 ttgaaagcagagttattttctgagattatcaaagaaaatgtttaaaatttaaatggatat 48
Query: 537 ataaaaatgttattaaatctaaatgaatatagaagtattgttaaaag 583
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 47 ataaaaatattattaaatctaaatgaatatagaagtattgttaaaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1028
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1018
Effective search space: 626070
Effective search space used: 626070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
