BAC Information

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BAC

Clone NameMSMg01-515H14
Chromosome16 (Build37)
Map Location 14,173,970 - 14,342,568
singlet/doubletdoublet
Overlap geneNde1, Myh11, 0610037P05Rik
Upstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik
Downstream geneAbcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H14.T7 (MSMg01no515_h14.b1)MSMg01-515H14.TJ (MSMg01no515_h14.g1)
ACCAG587704AG587705
length780779
length of high quality
(start - end)		654 (48 - 701)596 (79 - 674)
definitionCHROMAT_FILE: MSMg01no515_h14.b1 PHD_FILE: MSMg01no515_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:48 2005CHROMAT_FILE: MSMg01no515_h14.g1 PHD_FILE: MSMg01no515_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,342,254 - 14,342,568)(14,173,970 - 14,174,565)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTGACAAATGGGAGATTCACCATAGATACTTAAAAGAACAG
CCAAGTTACACTCATACAAGAATTTATCAAGGCCTTGGAAATAGGAGGTT
TGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGG
TGCTAGCTTTCACAAGGCTCAAAGGAGTAGCACAAATTGTGACTAGGGTG
TGAAATCCTTAGCTGTTATTAACTAACCCTAGGCAGGGCAGTTTTATCTT
TACTGTAAACATTTACCTGGTTCCTGTAAGTCCCTTTGAAGTCATTCCTT
TGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACATCCTAC
CCCTTTGTTTTCTGTATTCTATAAGAATACACTTCTATAAGAATACACAC
TAATGTCACTTTGTGACAATACATTCAGATTCTACACAGCCTCTTGTGTT
GATTTGTCTGTCATTCGCTGACTCCTTGTCCACCTGCAACTAGAGACCTG
TTCTATGCAGACAGGGACCAAAAAGGGTCTGTGACAGTTCACTTTCTAGA
CAACATAGCAGTGAGGTAAATAATCAAGATTCTTTTCAGCTGGTCTGGGC
TTAACTCTGACTGGGCAAGTTGTTCAATTTCTCTGTGCTCTAGTTTTTCT
AAGTACAAAGCAGAAATGATAACAGTAATTGCTACATTGAGTTATCATAA
CATTAAATGTATATATTTCAGGGAAATGCN

NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGAAGGTCAGTGGGCTCTG
CAAGGAGACAGGATGGCATGTAGCAGGTGCTGAGAGGATTGGCAGGCACA
TGGTTGGGAAAGTTGGCGCGTGCATTCTTTTTTTTATTTTTTTTTTAAAG
ATTTATTTATTTATTTTATGTGAGTACACTGTAGCTATACAGATGGTTGT
GAACCTTCATGTGGTTGTTCATCCTCTGTTCGCTCTGGTCAACCCTGCTC
GCTCAGTCCTTGCTTACTCCGGCCCAACGATTTAATTATTATTATACATA
AGTACACGATAAGTAACTGACTTCCGATGTACCAGAAAAGGGTGTCAGAT
CTAACGGGTGGTTGTTAGCCCTAATGTGGTTGCTGGGATTTGACCTCAGG
ACCTTTGGAAAAGCAGTCAGTGCTCTTATCCAGTGAGCCATCTCGCCAGT
CCTGGGGCGTGCATTCTTTGAATGACTGTCACTTATTCTTCACAGCATCT
TTTGTTGTCCTGGCTAGTTTTGTGTCAAGCTGGAGTCATCTAAAAGGAGG
GAACCTCAGTTGAGAAAATGTCTCCACTATAGGGCATTTTCTTAATTAGT
GGTTATTGGAGGGACCTATCCTGTTGTGCATGCAGCCATCCCTGGGCTGG
TGGTCTTGAGTTCTATAAGAAGGAAGGCTGAGCAAGTCCTGAGGAGCAAG
ACAGTAAGCAGCATCCCTTCACAGCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h14.b1 MSMg01no515_h14.b1 CHROMAT_FILE:
MSMg01no515_h14.b1 PHD_FILE: MSMg01no515_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:48 2005
         (654 letters)



>mm_chr16_14341515_14342568
          Length = 1054

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                        
Query: 340  ctgtgacatcctacccctttgttttctgtattctataagaatacacttctataagaatac 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ctgtgacatcctacccctttgttttctgtattctataagaatacacttctataagaatac 995

                                                                        
Query: 400  acactaatgtcactttgtgacaatacattcagattctacacagcctcttgtgttgatttg 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  acactaatgtcactttgtgacaatacattcagattctacacagcctcttgtgttgatttg 935

                                                                        
Query: 460  tctgtcattcgctgactccttgtccacctgcaactagagacctgttctatgcagacaggg 519
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 934  tctgttattcgctgactccttgtccacctgcaactagagacctgttctacgcagacaggg 875

                                                                        
Query: 520  accaaaaagggtctgtgacagttcactttctagacaacatagcagtgaggtaaataatca 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  accaaaaagggtctgtgacagttcactttctagacaacatagcagtgaggtaaataatca 815

                                                                        
Query: 580  agattcttttcagctggtctgggcttaactctgactgggcaagttgttcaatttctctgt 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  agattcttttcagctggtctgggcttaactctgactgggcaagttgttcaatttctctgt 755

                           
Query: 640  gctctagtttttcta 654
            |||||||||||||||
Sbjct: 754  gctctagtttttcta 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_h14.g1 MSMg01no515_h14.g1 CHROMAT_FILE:
MSMg01no515_h14.g1 PHD_FILE: MSMg01no515_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:48 2005
         (596 letters)



>mm_chr16_14173770_14174765
          Length = 996

 Score = 1106 bits (572), Expect = 0.0
 Identities = 590/596 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgaaggtcagtgggctctgcaaggagacaggatggcatgtagcaggtgctgagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgaaggtcagtgggctctgcaaggagacaggatggcatgtagcaggtgctgagagga 260

                                                                       
Query: 61  ttggcaggcacatggttgggaaagttggcgcgtgcattcttttttttattttttttttaa 120
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 261 ttggcaggcacatggttgggaaagttggagcgtgcattcttttttttattttttttttta 320

                                                                       
Query: 121 agatttatttatttattttatgtgagtacactgtagctatacagatggttgtgaaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttatttatttattttatgtgagtacactgtagctatacagatggttgtgaaccttc 380

                                                                       
Query: 181 atgtggttgttcatcctctgttcgctctggtcaaccctgctcgctcagtccttgcttact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggttgttcatcctctgtttgctctggtcaaccctgctcgctcagtccttgcttact 440

                                                                       
Query: 241 ccggcccaacgatttaattattattatacataagtacacgataagtaactgacttccgat 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 441 ccggcccaacgatttaattattattatacataagtacacggtaagtaactgacttccgac 500

                                                                       
Query: 301 gtaccagaaaagggtgtcagatctaacgggtggttgttagccctaatgtggttgctggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaccagaaaagggtgtcagatctaacgggtggttgttagccctaatgtggttgctggga 560

                                                                       
Query: 361 tttgacctcaggacctttggaaaagcagtcagtgctcttatccagtgagccatctcgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgacctcaggacctttggaaaagcagtcagtgctcttatccagtgagccatctcgcca 620

                                                                       
Query: 421 gtcctggggcgtgcattctttgaatgactgtcacttattcttcacagcatcttttgttgt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gtcctggggcgtgcattctttgaatgactgtcatttattcttcacagcatcttttgttgt 680

                                                                       
Query: 481 cctggctagttttgtgtcaagctggagtcatctaaaaggagggaacctcagttgagaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctggctagttttgtgtcaagctggagtcatctaaaaggagggaacctcagttgagaaaa 740

                                                                   
Query: 541 tgtctccactatagggcattttcttaattagtggttattggagggacctatcctgt 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtctccactatagggcattttcttaattagtggttattggagggacctatcctgt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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