BAC Information

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BAC

Clone NameMSMg01-515H15
Chromosome16 (Build37)
Map Location 14,173,970 - 14,342,568
singlet/doubletdoublet
Overlap geneNde1, Myh11, 0610037P05Rik
Upstream geneGt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik
Downstream geneAbcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H15.T7 (MSMg01no515_h15.b1)MSMg01-515H15.TJ (MSMg01no515_h15.g1)
ACCAG587706AG587707
length753751
length of high quality
(start - end)		667 (54 - 720)639 (83 - 721)
definitionCHROMAT_FILE: MSMg01no515_h15.b1 PHD_FILE: MSMg01no515_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:48 2005CHROMAT_FILE: MSMg01no515_h15.g1 PHD_FILE: MSMg01no515_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,342,241 - 14,342,568)(14,173,970 - 14,174,608)
sequence
NTTTTTCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCTGACTTTCGGGAGATTCACCATAGATACTTAAAA
GAACAGCCAAGTTACACTCATACAAGAATTTATCAAGGCCTTGGAAATAG
GAGGTTTGTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACC
CCCTGGTGCTAGCTTTCACAAGGCTCAAAGGAGTAGCACAAATTGTGACT
AGGGTGTGAAATCCTTAGCTGTTATTAACTAACCCTAGGCAGGGCAGTTT
TATCTTTACTGTAAACATTTACCTGGTTCCTGTAAGTCCCTTTGAAGTCA
TTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACA
TCCTACCCCTTTGTTTTCTGTATTCTATAAGAATACACTTCTATAAGAAT
ACACACTAATGTCACTTTGTGACAATACATTCAGATTCTACACAGCCTCT
TGTGTTGATTTGTCTGTCATTCGCTGACTCCTTGTCCACCTGCAACTAGA
GACCTGTTCTATGCAGACAGGGACCAAAAAGGGTCTGTGACAGTTCACTT
TCTAGACAACATAGCAGTGAGGTAAATAATCAAGATTCTTTTCAGCTGGT
CTGGGCTTAACTCTGACTGGGCAAGTTGTTCAATTTCTCTGTGCTCTAGT
TTTTCTAAGTACAAAGCAGAAATGATAACAGTAATTGCTACATTGAGTTA
TCN

NTTTTTTCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGAAGGTCAGTGGGC
TCTGCAAGGAGACAGGATGGCATGTAGCAGGTGCTGAGAGGATTGGCAGG
CACATGGTTGGGAAAGTTGGCGCGTGCATTCTTTTTTTTATTTTTTTTTT
AAAGATTTATTTATTTATTTTATGTGAGTACACTGTAGCTATACAGATGG
TTGTGAACCTTCATGTGGTTGTTCATCCTCTGTTCGCTCTGGTCAACCCT
GCTCGCTCAGTCCTTGCTTACTCCGGCCCAACGATTTAATTATTATTATA
CATAAGTACACGATAAGTAACTGACTTCCGATGTACCAGAAAAGGGTGTC
AGATCTAACGGGTGGTTGTTAGCCCTAATGTGGTTGCTGGGATTTGACCT
CAGGACCTTTGGAAAAGCAGTCAGTGCTCTTATCCAGTGAGCCATCTCGC
CAGTCCTGGGGCGTGCATTCTTTGAATGACTGTCACTTATTCTTCACAGC
ATCTTTTGTTGTCCTGGCTAGTTTTGTGTCAAGCTGGAGTCATCTAAAAG
GAGGGAACCTCAGTTGAGAAAATGTCTCCACTATAGGGCATTTTCTTAAT
TAGTGGTTATTGGAGGGACCTATCCTGTTGTGCATGCAGCCATCCCTGGG
CTGGTGGTCTTGAGTTCTATAAGAAGGAAGGCTGAGCAAGCCATGAGGAG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h15.b1 MSMg01no515_h15.b1 CHROMAT_FILE:
MSMg01no515_h15.b1 PHD_FILE: MSMg01no515_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:48 2005
         (667 letters)



>mm_chr16_14341502_14342568
          Length = 1067

 Score =  619 bits (320), Expect = 0.0
 Identities = 326/328 (99%)
 Strand = Plus / Minus

                                                                        
Query: 340  ctgtgacatcctacccctttgttttctgtattctataagaatacacttctataagaatac 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ctgtgacatcctacccctttgttttctgtattctataagaatacacttctataagaatac 1008

                                                                        
Query: 400  acactaatgtcactttgtgacaatacattcagattctacacagcctcttgtgttgatttg 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 acactaatgtcactttgtgacaatacattcagattctacacagcctcttgtgttgatttg 948

                                                                        
Query: 460  tctgtcattcgctgactccttgtccacctgcaactagagacctgttctatgcagacaggg 519
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 947  tctgttattcgctgactccttgtccacctgcaactagagacctgttctacgcagacaggg 888

                                                                        
Query: 520  accaaaaagggtctgtgacagttcactttctagacaacatagcagtgaggtaaataatca 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  accaaaaagggtctgtgacagttcactttctagacaacatagcagtgaggtaaataatca 828

                                                                        
Query: 580  agattcttttcagctggtctgggcttaactctgactgggcaagttgttcaatttctctgt 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  agattcttttcagctggtctgggcttaactctgactgggcaagttgttcaatttctctgt 768

                                        
Query: 640  gctctagtttttctaagtacaaagcaga 667
            ||||||||||||||||||||||||||||
Sbjct: 767  gctctagtttttctaagtacaaagcaga 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_h15.g1 MSMg01no515_h15.g1 CHROMAT_FILE:
MSMg01no515_h15.g1 PHD_FILE: MSMg01no515_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:49 2005
         (639 letters)



>mm_chr16_14173770_14174808
          Length = 1039

 Score = 1181 bits (611), Expect = 0.0
 Identities = 632/639 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgaaggtcagtgggctctgcaaggagacaggatggcatgtagcaggtgctgagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgaaggtcagtgggctctgcaaggagacaggatggcatgtagcaggtgctgagagga 260

                                                                       
Query: 61  ttggcaggcacatggttgggaaagttggcgcgtgcattcttttttttattttttttttaa 120
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 261 ttggcaggcacatggttgggaaagttggagcgtgcattcttttttttattttttttttta 320

                                                                       
Query: 121 agatttatttatttattttatgtgagtacactgtagctatacagatggttgtgaaccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttatttatttattttatgtgagtacactgtagctatacagatggttgtgaaccttc 380

                                                                       
Query: 181 atgtggttgttcatcctctgttcgctctggtcaaccctgctcgctcagtccttgcttact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggttgttcatcctctgtttgctctggtcaaccctgctcgctcagtccttgcttact 440

                                                                       
Query: 241 ccggcccaacgatttaattattattatacataagtacacgataagtaactgacttccgat 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 441 ccggcccaacgatttaattattattatacataagtacacggtaagtaactgacttccgac 500

                                                                       
Query: 301 gtaccagaaaagggtgtcagatctaacgggtggttgttagccctaatgtggttgctggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaccagaaaagggtgtcagatctaacgggtggttgttagccctaatgtggttgctggga 560

                                                                       
Query: 361 tttgacctcaggacctttggaaaagcagtcagtgctcttatccagtgagccatctcgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgacctcaggacctttggaaaagcagtcagtgctcttatccagtgagccatctcgcca 620

                                                                       
Query: 421 gtcctggggcgtgcattctttgaatgactgtcacttattcttcacagcatcttttgttgt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 gtcctggggcgtgcattctttgaatgactgtcatttattcttcacagcatcttttgttgt 680

                                                                       
Query: 481 cctggctagttttgtgtcaagctggagtcatctaaaaggagggaacctcagttgagaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctggctagttttgtgtcaagctggagtcatctaaaaggagggaacctcagttgagaaaa 740

                                                                       
Query: 541 tgtctccactatagggcattttcttaattagtggttattggagggacctatcctgttgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtctccactatagggcattttcttaattagtggttattggagggacctatcctgttgtg 800

                                                  
Query: 601 catgcagccatccctgggctggtggtcttgagttctata 639
           ||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 catgcagccatccctggactggtggtcttgagttctata 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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